Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,085,868 – 5,085,986 |
Length | 118 |
Max. P | 0.929144 |
Location | 5,085,868 – 5,085,986 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.10 |
Mean single sequence MFE | -34.38 |
Consensus MFE | -24.02 |
Energy contribution | -24.02 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.13 |
Mean z-score | -3.18 |
Structure conservation index | 0.70 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5085868 118 + 22407834 UAGAAUGAAGAAAAAAGAUUCCGUCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG--GGGCGUUUAGAAAGUAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU ...................(((.((.(((((....)))))))...)))......(((.((((--((.(((((((...(((....))).))))))).)))))).)))(((.......))). ( -36.10) >DroSec_CAF1 15348 103 + 1 ---------------AUAUUCCUCCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG--GGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU ---------------....(((((..(((((....)))))...)))))......(((.((((--((.(((((....((((......))))))))).)))))).)))(((.......))). ( -34.40) >DroSim_CAF1 17923 118 + 1 UAGAAUGAAGCAAAAAGAUUCCUCCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG--GGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU .........(((((.....(((((..(((((....)))))...)))))..........((((--((.(((((....((((......))))))))).)))))).)))))..(((....))) ( -37.30) >DroYak_CAF1 16776 120 + 1 UGGCAUGAAGACAAAAGAUUCCACUGUGUUAAAUGUAGCAGAAGAGGAUAAGAAGGGGGCGGGGGGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCAGCGUUUGCAUAGCAAUUGCU .((((..............(((.((.(((((....)))))..)).)))......(.(((((..(((.(((((....((((......))))))))).)))..))))).)........)))) ( -29.70) >consensus UAGAAUGAAGAAAAAAGAUUCCUCCGUGUUAAAUGUAGCAGAAGAGGAUAAGAAAGAGGCGG__GGGCGUUUAGAAAGCAGAAAUAUGCUAAGCGACCCCGCGUUUGCAUAGCAAUUGCU ...................(((((..(((((....)))))...)))))......(((.(((...((((((((....((((......))))))))).)))))).)))(((.......))). (-24.02 = -24.02 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:45 2006