Locus 1845

Sequence ID 2L_DroMel_CAF1
Location 5,085,220 – 5,085,339
Length 119
Max. P 0.948740
window2969

overview

Window 9

Location 5,085,220 – 5,085,339
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.03
Mean single sequence MFE -31.07
Consensus MFE -24.84
Energy contribution -26.27
Covariance contribution 1.44
Combinations/Pair 1.10
Mean z-score -3.12
Structure conservation index 0.80
SVM decision value 1.38
SVM RNA-class probability 0.948740
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5085220 119 + 22407834
CGUUUGUUGAUUGCUCUUUGGUAGGCAUCAAUCUACACAAAUGGACAAAGCCAUAAAAA-UUGCUUUGAAGAUGGGAUUUUUACGCCGGCUAAAGAGAAAAUAAAUGACAACAAAUUAAG
((((((((.....(((((((((.(((.....((((......))))((((((.((....)-).))))))................))).)))))))))..))))))))............. ( -30.20)
>DroSec_CAF1 14748 119 + 1
UGUCGUUUGAUUGCGCUUUGGUAGGCAUCAAUCUACACAAAUGGACAAAGCCAUAAAAA-UUGCUUUGAAGAUGGGAUUUUUCCGCCGGCUAAAGAGAAAAUAAAUGACAAAAAAUUAAG
(((((((((.((...(((((((.((((((..((((......))))((((((.((....)-).))))))..))).(((....)))))).)))))))...)).))))))))).......... ( -34.40)
>DroSim_CAF1 17328 117 + 1
--UCGUUUGAUUGCUCUUUGGUAGGCAUAAAUCUACACAAAUGGACAAAGCCAUAAAAA-UUGCUUUGAAGAUGGGAUUUUUCCGCAGGCUAAAGAGAAAAUAAAUGACAACAAAUUAAG
--(((((((.((.(((((((((..((....((((.((....))..((((((.((....)-).)))))).)))).(((....)))))..))))))))).)).)))))))............ ( -30.10)
>DroYak_CAF1 16153 118 + 1
--UCGUUUGAUUGCUCUUUGGUAGCCAUCAAUCAACGCAAAUGGACAAAGCCAUAACAAUUUGCUUUGAAGAUGGGAUUUUUCCGACGACUAAAGAGAAAAUGAAUGACAACAAAUUAAG
--((((((.....(((((((((...((((..((((.((((((((......))))......)))).)))).))))(((....)))....))))))))).....))))))............ ( -29.60)
>consensus
__UCGUUUGAUUGCUCUUUGGUAGGCAUCAAUCUACACAAAUGGACAAAGCCAUAAAAA_UUGCUUUGAAGAUGGGAUUUUUCCGCCGGCUAAAGAGAAAAUAAAUGACAACAAAUUAAG
.((((((((.((.(((((((((.(((...................((((((...........))))))......(((....)))))).))))))))).)).))))))))........... (-24.84 = -26.27 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:44 2006