Locus 1841

Sequence ID 2L_DroMel_CAF1
Location 5,081,848 – 5,081,952
Length 104
Max. P 0.664500
window2959

overview

Window 9

Location 5,081,848 – 5,081,952
Length 104
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 90.94
Mean single sequence MFE -22.65
Consensus MFE -17.27
Energy contribution -17.90
Covariance contribution 0.63
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.76
SVM decision value 0.28
SVM RNA-class probability 0.664500
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5081848 104 - 22407834
GUGAAUUGAAUAAAAUUAGUUAUCGGAUUGUUCAAUUAAUUCUUGACCAGUGAUGAUGGCAAAGUGUUAAUAGC-AGUGAUUAAUUCGCAUUGGAAUUUAACUCU
(((((((((.........(((((((.((((.((((.......)))).))))..)))))))..(.(((.....))-).)..)))))))))................ ( -21.00)
>DroSec_CAF1 11272 105 - 1
GCGAAUUGAAUAAAAACAGUUAUCAGAUUGUUCAAUUAAUUCUUGAGCAGCGAUGAUGGCAAAGUGUUAAUAGUUAAUAAUUAAUUCGCAUUGGAAUUUAACUCC
(((((((((.........(((((((..((((((((.......))))))))...)))))))....(((((.....))))).)))))))))...(((.......))) ( -25.70)
>DroSim_CAF1 13531 105 - 1
GCGAAUUCAAUAAAAAUAGUUAUCAGAUUGUUCAAUUAAUUCUUGAGCAGUGAUGAUGGCAAAGUGUUAAUAGUUAAUAAUUAAUUCGCAUUGGAAUUUAACUCU
(((((((.(((.......(((((((.(((((((((.......)))))))))..)))))))....(((((.....)))))))))))))))................ ( -24.20)
>DroYak_CAF1 12722 104 - 1
GUAGAUUUAAUAAAAAUACUUAUCAGAUUGUUCAAUUAAUUCUUGAGCAGCGUUGAUGGCAAAGUGUUAAUAGC-ACUGAUUAAUUCGCAUUGGAAUUUAACUCU
.(((((((............((((((.((((((((.......))))))))..))))))((..(((((.....))-)))((.....))))....)))))))..... ( -19.70)
>consensus
GCGAAUUGAAUAAAAAUAGUUAUCAGAUUGUUCAAUUAAUUCUUGAGCAGCGAUGAUGGCAAAGUGUUAAUAGC_AAUAAUUAAUUCGCAUUGGAAUUUAACUCU
(((((((((.........(((((((..((((((((.......))))))))...)))))))...((....)).........)))))))))................ (-17.27 = -17.90 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:35 2006