Locus 184

Sequence ID 2L_DroMel_CAF1
Location 569,785 – 569,905
Length 120
Max. P 0.749513
window274 window275

overview

Window 4

Location 569,785 – 569,905
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -54.00
Consensus MFE -43.98
Energy contribution -42.43
Covariance contribution -1.55
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.81
SVM decision value 0.47
SVM RNA-class probability 0.749513
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 569785 120 + 22407834
ACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAGGCAAUGGCCAUGGCCACGCCCUCUGCGGGAGCUCUGGCUGCGAUGACACCAGAGCAAUUGCAAGCCUAUCGCUGGGAAAAGGAAAUC
...(((((((((.(.(((((....))))))..(((..((((....)))).)))...(((((..(((((((.((......)))))))))..))))).))))....)))))........... ( -48.60)
>DroPse_CAF1 10163 120 + 1
ACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUGGCCACGCCCACACCUGGUGCGUUGGCGGCCAUGACGCCCGAGCAGCUGCAGGCGUACCGCUGGGAGAAGGAGAUC
...((..((((..(.(((((....)))))).....(((((((...((((((((((....))).))).)))))))))))(((((...((....)).))))).))))..))........... ( -56.70)
>DroPer_CAF1 10147 120 + 1
ACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUGGCCACGCCCACACCUGGUGCGUUGGCGGCCAUGACGCCCGAGCAGCUGCAGGCGUACCGCUGGGAGAAGGAGAUC
...((..((((..(.(((((....)))))).....(((((((...((((((((((....))).))).)))))))))))(((((...((....)).))))).))))..))........... ( -56.70)
>consensus
ACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUGGCCACGCCCACACCUGGUGCGUUGGCGGCCAUGACGCCCGAGCAGCUGCAGGCGUACCGCUGGGAGAAGGAGAUC
...((((((((((((.(((....(((.((((..(((.((((....)))).((((((.....)))....))))))..)))).))))))..))))).(.....))))))))........... (-43.98 = -42.43 +  -1.55) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 569,785 – 569,905
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.00
Mean single sequence MFE -53.70
Consensus MFE -47.10
Energy contribution -45.33
Covariance contribution -1.77
Combinations/Pair 1.20
Mean z-score -1.40
Structure conservation index 0.88
SVM decision value 0.18
SVM RNA-class probability 0.620800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 569785 120 - 22407834
GAUUUCCUUUUCCCAGCGAUAGGCUUGCAAUUGCUCUGGUGUCAUCGCAGCCAGAGCUCCCGCAGAGGGCGUGGCCAUGGCCAUUGCCUUGACUCCGAUAGGAGUACUGCCUCCGGGCGU
...........(((.((((.....))))....((((((((((....))).)))))))....((((((((((((((....)))).)))))).(((((....))))).))))....)))... ( -48.90)
>DroPse_CAF1 10163 120 - 1
GAUCUCCUUCUCCCAGCGGUACGCCUGCAGCUGCUCGGGCGUCAUGGCCGCCAACGCACCAGGUGUGGGCGUGGCCAUGGCCAUGGCUUUGACUCCCACGGGAGUGCUGCCGCCAGGUGU
.........(.((..((((((((((((.((...)))))))(((((((((((((.(((.(((....))))))))))...)))))))))....(((((....)))))).))))))..)).). ( -56.10)
>DroPer_CAF1 10147 120 - 1
GAUCUCCUUCUCCCAGCGGUACGCCUGCAGCUGCUCGGGCGUCAUGGCCGCCAACGCACCAGGUGUGGGCGUGGCCAUGGCCAUGGCUUUGACUCCCACGGGAGUGCUGCCGCCAGGUGU
.........(.((..((((((((((((.((...)))))))(((((((((((((.(((.(((....))))))))))...)))))))))....(((((....)))))).))))))..)).). ( -56.10)
>consensus
GAUCUCCUUCUCCCAGCGGUACGCCUGCAGCUGCUCGGGCGUCAUGGCCGCCAACGCACCAGGUGUGGGCGUGGCCAUGGCCAUGGCUUUGACUCCCACGGGAGUGCUGCCGCCAGGUGU
.........(((((((((((.........)))))).(((.((((..((((((...(((.....))).)))(((((....))))))))..)))).)))..)))))....(((....))).. (-47.10 = -45.33 +  -1.77) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:33 2006