Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 569,785 – 569,905 |
Length | 120 |
Max. P | 0.749513 |
Location | 569,785 – 569,905 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -54.00 |
Consensus MFE | -43.98 |
Energy contribution | -42.43 |
Covariance contribution | -1.55 |
Combinations/Pair | 1.17 |
Mean z-score | -1.95 |
Structure conservation index | 0.81 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 569785 120 + 22407834 ACGCCCGGAGGCAGUACUCCUAUCGGAGUCAAGGCAAUGGCCAUGGCCACGCCCUCUGCGGGAGCUCUGGCUGCGAUGACACCAGAGCAAUUGCAAGCCUAUCGCUGGGAAAAGGAAAUC ...(((((((((.(.(((((....))))))..(((..((((....)))).)))...(((((..(((((((.((......)))))))))..))))).))))....)))))........... ( -48.60) >DroPse_CAF1 10163 120 + 1 ACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUGGCCACGCCCACACCUGGUGCGUUGGCGGCCAUGACGCCCGAGCAGCUGCAGGCGUACCGCUGGGAGAAGGAGAUC ...((..((((..(.(((((....)))))).....(((((((...((((((((((....))).))).)))))))))))(((((...((....)).))))).))))..))........... ( -56.70) >DroPer_CAF1 10147 120 + 1 ACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUGGCCACGCCCACACCUGGUGCGUUGGCGGCCAUGACGCCCGAGCAGCUGCAGGCGUACCGCUGGGAGAAGGAGAUC ...((..((((..(.(((((....)))))).....(((((((...((((((((((....))).))).)))))))))))(((((...((....)).))))).))))..))........... ( -56.70) >consensus ACACCUGGCGGCAGCACUCCCGUGGGAGUCAAAGCCAUGGCCAUGGCCACGCCCACACCUGGUGCGUUGGCGGCCAUGACGCCCGAGCAGCUGCAGGCGUACCGCUGGGAGAAGGAGAUC ...((((((((((((.(((....(((.((((..(((.((((....)))).((((((.....)))....))))))..)))).))))))..))))).(.....))))))))........... (-43.98 = -42.43 + -1.55)
Location | 569,785 – 569,905 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -53.70 |
Consensus MFE | -47.10 |
Energy contribution | -45.33 |
Covariance contribution | -1.77 |
Combinations/Pair | 1.20 |
Mean z-score | -1.40 |
Structure conservation index | 0.88 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 569785 120 - 22407834 GAUUUCCUUUUCCCAGCGAUAGGCUUGCAAUUGCUCUGGUGUCAUCGCAGCCAGAGCUCCCGCAGAGGGCGUGGCCAUGGCCAUUGCCUUGACUCCGAUAGGAGUACUGCCUCCGGGCGU ...........(((.((((.....))))....((((((((((....))).)))))))....((((((((((((((....)))).)))))).(((((....))))).))))....)))... ( -48.90) >DroPse_CAF1 10163 120 - 1 GAUCUCCUUCUCCCAGCGGUACGCCUGCAGCUGCUCGGGCGUCAUGGCCGCCAACGCACCAGGUGUGGGCGUGGCCAUGGCCAUGGCUUUGACUCCCACGGGAGUGCUGCCGCCAGGUGU .........(.((..((((((((((((.((...)))))))(((((((((((((.(((.(((....))))))))))...)))))))))....(((((....)))))).))))))..)).). ( -56.10) >DroPer_CAF1 10147 120 - 1 GAUCUCCUUCUCCCAGCGGUACGCCUGCAGCUGCUCGGGCGUCAUGGCCGCCAACGCACCAGGUGUGGGCGUGGCCAUGGCCAUGGCUUUGACUCCCACGGGAGUGCUGCCGCCAGGUGU .........(.((..((((((((((((.((...)))))))(((((((((((((.(((.(((....))))))))))...)))))))))....(((((....)))))).))))))..)).). ( -56.10) >consensus GAUCUCCUUCUCCCAGCGGUACGCCUGCAGCUGCUCGGGCGUCAUGGCCGCCAACGCACCAGGUGUGGGCGUGGCCAUGGCCAUGGCUUUGACUCCCACGGGAGUGCUGCCGCCAGGUGU .........(((((((((((.........)))))).(((.((((..((((((...(((.....))).)))(((((....))))))))..)))).)))..)))))....(((....))).. (-47.10 = -45.33 + -1.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:33 2006