Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,079,729 – 5,079,839 |
Length | 110 |
Max. P | 0.645357 |
Location | 5,079,729 – 5,079,839 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -20.80 |
Consensus MFE | -17.76 |
Energy contribution | -18.07 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.51 |
Structure conservation index | 0.85 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5079729 110 + 22407834 UUUUUGUAUUAAAAUAUACAAAUGUACGGAUAAUUGCGCUCGAAUUAUUGUUGAGCUAUGAAUUCACU-CGCCUCUUAUUUGCCCAGCAAUUUAUUACCAAUUUUUUUUGC-------- ..(((((((......)))))))((..(((((((..((((((((.......))))))...((......)-)))...)))))))..))((((.................))))-------- ( -17.53) >DroSec_CAF1 9165 110 + 1 -UUUUGUAUUAAAAUAUACAAAUGUACGGAUAAUUGCGCUCGAUUUAUUGUCGAGCUAUGAAUUCACUUCGCCUCUUAUUUGCCCAGCAAUUUAUUACCAAUUUUGUUUGC-------- -.(((((((......)))))))((..(((((((..(((((((((.....)))))))...(((.....)))))...)))))))..))((((.................))))-------- ( -22.33) >DroSim_CAF1 10975 111 + 1 UUUUUGUAUUAAAAUAUACAAAUGUACGGAUAAUUGCGCUCGAUUUAUUGUCGAGCCAUGAAUUCACUUCGCCUCUUAUUUGCCCAGCAAUUUAUUACCAAUUUUGUUUGC-------- ..(((((((......)))))))((..(((((((..(((((((((.....)))))))...(((.....)))))...)))))))..))((((.................))))-------- ( -21.93) >DroYak_CAF1 10469 119 + 1 UUUUCGUAUAAAAAUAUACAAAUAUACAGAUAAUUGCGCUCGAUUUAUUGUCGAGCUAUGAAUUCACUUCGCCUCUUAUUUGCCCAGCAAUUUAUUACCAAUUUGGUUAGCCACACACG .....(((((....))))).........((((((((((((((((.....)))))))...(((.....)))................)))).))))).......(((....)))...... ( -21.40) >consensus UUUUUGUAUUAAAAUAUACAAAUGUACGGAUAAUUGCGCUCGAUUUAUUGUCGAGCUAUGAAUUCACUUCGCCUCUUAUUUGCCCAGCAAUUUAUUACCAAUUUUGUUUGC________ ..(((((((......)))))))......((((((((((((((((.....)))))))..((....))....................)))).)))))....................... (-17.76 = -18.07 + 0.31)
Location | 5,079,729 – 5,079,839 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.30 |
Mean single sequence MFE | -21.70 |
Consensus MFE | -19.81 |
Energy contribution | -19.88 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.26 |
Structure conservation index | 0.91 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5079729 110 - 22407834 --------GCAAAAAAAAUUGGUAAUAAAUUGCUGGGCAAAUAAGAGGCG-AGUGAAUUCAUAGCUCAACAAUAAUUCGAGCGCAAUUAUCCGUACAUUUGUAUAUUUUAAUACAAAAA --------............((((((...(..((.(.(........).).-))..).......((((...........))))...))))))......(((((((......))))))).. ( -17.40) >DroSec_CAF1 9165 110 - 1 --------GCAAACAAAAUUGGUAAUAAAUUGCUGGGCAAAUAAGAGGCGAAGUGAAUUCAUAGCUCGACAAUAAAUCGAGCGCAAUUAUCCGUACAUUUGUAUAUUUUAAUACAAAA- --------..........(..((((....))))..)((..((((...(((((.....)))...((((((.......))))))))..))))..))...(((((((......))))))).- ( -21.50) >DroSim_CAF1 10975 111 - 1 --------GCAAACAAAAUUGGUAAUAAAUUGCUGGGCAAAUAAGAGGCGAAGUGAAUUCAUGGCUCGACAAUAAAUCGAGCGCAAUUAUCCGUACAUUUGUAUAUUUUAAUACAAAAA --------..........(..((((....))))..)((..((((...(((((.....)))...((((((.......))))))))..))))..))...(((((((......))))))).. ( -21.30) >DroYak_CAF1 10469 119 - 1 CGUGUGUGGCUAACCAAAUUGGUAAUAAAUUGCUGGGCAAAUAAGAGGCGAAGUGAAUUCAUAGCUCGACAAUAAAUCGAGCGCAAUUAUCUGUAUAUUUGUAUAUUUUUAUACGAAAA (((((((((....)))..(..((((....))))..)((((((((((.(((((.....)))...((((((.......)))))))).....)))...))))))).......)))))).... ( -26.60) >consensus ________GCAAACAAAAUUGGUAAUAAAUUGCUGGGCAAAUAAGAGGCGAAGUGAAUUCAUAGCUCGACAAUAAAUCGAGCGCAAUUAUCCGUACAUUUGUAUAUUUUAAUACAAAAA ..................(..((((....))))..)((..((((...((...(((....))).((((((.......))))))))..))))..))...(((((((......))))))).. (-19.81 = -19.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:30 2006