Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,063,979 – 5,064,163 |
Length | 184 |
Max. P | 0.996013 |
Location | 5,063,979 – 5,064,072 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 67.37 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -9.37 |
Energy contribution | -8.76 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.64 |
Mean z-score | -4.32 |
Structure conservation index | 0.25 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.996013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5063979 93 - 22407834 GAAGGGGGGGGGGGGGGUUGAGA---GAGAGGUUGAGUUGAAGGUACAGCGUG--UGU--AAG-CUGUGUUUGUCUUUACCUUCUUUCUUU----------------CUCCCUUUCU (((((((((..((..((((....---))(((((.(((....(..((((((...--...--..)-)))))..)..))).)))))))..))..----------------))))))))). ( -41.30) >DroSec_CAF1 11060 89 - 1 GCUGGGUGACAGGGAGGUUGA-------GAGGUUGAGUUGGAGGUAAAGCGUG--UGU--AAG-CUGUGUUUGUCUUUACCUUCUUUCCUU----------------CUCCCUUUCU ....(....)((..(((..((-------((((..(((..((((((((((((.(--..(--...-..)..).)).)))))))))).))))))----------------))))))..)) ( -29.20) >DroSim_CAF1 11527 89 - 1 GCUGGGGGGGAGGGGGGGUGA-------GAGGUUGAGUUGGAGGUAAAGCGUG--UGU--AAG-CUGUGUUUGUCUUUACCUUCUUUCCUU----------------CUCCCUUUCU ...(..((((((((((((.((-------.((((.(((.(..(.(...(((...--...--..)-)).).)..).))).)))))).))))))----------------))))))..). ( -35.00) >DroEre_CAF1 11417 93 - 1 GGUGGGGGGAGGGAGAGGUGGGAGGUGAGAGGUUG-----UAGGUAUAGCGUGUGUGU--AAG-CUGUGUUUGUCUUCACCUGCUUUCUUU----------------CUCCCUCCCU .....(((((((((((((.((.((((((.(((...-----((..((((((........--..)-)))))..))))))))))).))...)))----------------)))))))))) ( -42.70) >DroYak_CAF1 11317 105 - 1 ---GAGGGAAGGGGGA----GGAGGUGAGAGGUUGUGUUUUAGGUACAGCGUG--UGU--AAG-CUAUGUUUGUCUUCGUCUUCUUUCUUUCGACCACCCUCCCUACCUCCCUCCCU ---((((((..(((((----((.(((((((((..(......(((.((((((((--(..--..)-).))).)))))))......)..)))))).)))..)))))))...))))))... ( -38.60) >DroAna_CAF1 9835 89 - 1 GC---GGAGAAAGAGGGAAGA-------AAGGUGGGUAGAAAGGUGAGGCGUG--UGUAUAAGCCUGUGUUUGUAUUUGCCUUUCUUUCUU----------------CUGGCUUGCU ((---(.((..((((((((((-------((((..((((.(((..(.((((...--.......)))))..))).))))..))))))))))))----------------))..))))). ( -38.80) >consensus GCUGGGGGGAAGGGGGGGUGA_______GAGGUUGAGUUGAAGGUAAAGCGUG__UGU__AAG_CUGUGUUUGUCUUUACCUUCUUUCCUU________________CUCCCUUUCU ..........(((((((...........((((.......(((((((.((((....................)).)).)))))))...))))................)))))))... ( -9.37 = -8.76 + -0.61)
Location | 5,064,072 – 5,064,163 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -17.49 |
Energy contribution | -17.68 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.65 |
Structure conservation index | 0.77 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5064072 91 - 22407834 AAACAAGCC---GAAAAUCAGCUGUUUCCUAGGUACAAUUUGGCAAGCGGAACAAACGGAAGUGGAAACGAAACAGCUGG-------UACCAAACAUG---AAG .........---....((((((((((((...........................((....))(....))))))))))))-------)..........---... ( -21.90) >DroSec_CAF1 11149 90 - 1 AAACAAGCC---GAAAAUCAGCUGUUUCCUAGGUACAAUUUGGCAAGCGGAACAAGCGGAAGUGGA-ACGAAACAGCUGG-------UACAAAACAGG---GUG ......(((---....((((((((((((..........(((.(....).)))...((....))...-..)))))))))))-------).(......))---)). ( -22.30) >DroSim_CAF1 11616 91 - 1 AAACAAGCC---GAAAAUCAGCUGUUUCCUAGGUACAAUUUGGCAAGCGGAACAAGCGGAAGUGGAAACGAAACAGCUGG-------UACAAAACAGG---GUG ......(((---....((((((((((((...........................((....))(....))))))))))))-------).(......))---)). ( -23.50) >DroEre_CAF1 11510 94 - 1 AAACAAGCC---GAAAAUCAGCUGUUUCCUAGGUACAAUUUGGCAUGCGGAACAAGCGGAAGUGGAAACGAAACAGCUGG-------UACAAAACUAAGUGAUG .........---....((((((((((((..........(((.((.((.....)).)).)))..(....))))))))))))-------)................ ( -23.30) >DroYak_CAF1 11422 88 - 1 AAACAAGCC---GAAAAUCAGCUGUUUCCUAGGUACAAUUUGGCAGACGGAACAAGCGGAAGUGGAAGCGAAACAGCUGC-------UACAAGCGUAC------ ......((.---......((((((((((((........((((.....))))....((....))...)).)))))))))).-------.....))....------ ( -20.92) >DroPer_CAF1 9093 99 - 1 AAACAAACCCCAGAGUAUCAGCUGUUUCCUCGGUACACUUUGGCAA-CGGAACAGGCGGAAGUGGAAACGAAACAUAUGCCCGCCUCCACCCAAUAGG----UG ......((((((((((....((((......))))..)))))))...-.(((...(((((..(((...........)))..))))))))........))----). ( -24.70) >consensus AAACAAGCC___GAAAAUCAGCUGUUUCCUAGGUACAAUUUGGCAAGCGGAACAAGCGGAAGUGGAAACGAAACAGCUGG_______UACAAAACAGG____UG ..................((((((((((...........................((....))(....)))))))))))......................... (-17.49 = -17.68 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:17 2006