Locus 1830

Sequence ID 2L_DroMel_CAF1
Location 5,057,322 – 5,057,442
Length 120
Max. P 0.759776
window2937

overview

Window 7

Location 5,057,322 – 5,057,442
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.58
Mean single sequence MFE -41.86
Consensus MFE -32.60
Energy contribution -33.72
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -1.72
Structure conservation index 0.78
SVM decision value 0.50
SVM RNA-class probability 0.759776
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5057322 120 - 22407834
GGCAGUUGGAAAUUUAUGGGGUGUCCCUAACCAAGUAUCUGGAGAUCGUCUUCGGACGCCCCUUUUCGCCGGAUUUUGUAGUGCAUGUGGAGAAUCUGUACUACUUACGGGGGCUCCAGA
.....(((((.......(((((((((....(((......))).((......)))))))))))...((.(((......((((((((.((.....)).))))))))...))).)).))))). ( -42.10)
>DroSec_CAF1 4372 120 - 1
GGCGGUUGGAAAAUUAUGGGGUGUCCCUAACCAAGUAUCUGGAGAUCGUCUUCGGACGCCCCUUUUCGCCGGAUUUUGUAGUGCAUGUGGAGAAUCUGUACUACUUUCGGGAGCUCCAGA
.....(((((.......(((((((((....(((......))).((......)))))))))))..(((.(((((....((((((((.((.....)).)))))))).)))))))).))))). ( -43.70)
>DroSim_CAF1 4647 120 - 1
GGCGGUUGGAAAGUUAUGGGGUGUCCCUAACCAAGUAUCUGGAGAUCGUCUUCGGACGCCCCUUUUCGCCGGAUUUUGUAGUGCACGUGGAGAAUCUGUACUACUUUCGGGAGCUCCAGA
.....(((((.......(((((((((....(((......))).((......)))))))))))..(((.(((((....((((((((.((.....)).)))))))).)))))))).))))). ( -43.70)
>DroEre_CAF1 4469 120 - 1
GAGAGCUGGAAAAUUAUGGGGUGUACCUAACCAAGUAUCUUGAGAUCGUCUUCCGACGCCCCUUUUCGCCAGACUUUGUGGUGCAAGUGGAGAACCUGUACUACAUUAUGGGGCUCUAUG
.((((((.(((((....(((((((.......((((...)))).((......))..)))))))))))).(((.....(((((((((.((.....)).)))))))))...)))))))))... ( -39.40)
>DroYak_CAF1 4419 120 - 1
GAGAGCUGGAAAAUUAUGGGGUGUCCCUAACCAAGUAUCUUGAGAUCGUCUUCAGACGCCCCUUUUCGCCGGAUUUUGUGGUGCAGGUGGAUAAUCUUUACUACUUAAUGGGGCUCCAGG
.....(((((.......((((((((......((((...)))).((......)).)))))))).....(((..(((..((((((.((((.....)))).))))))..)))..)))))))). ( -40.40)
>consensus
GGCAGUUGGAAAAUUAUGGGGUGUCCCUAACCAAGUAUCUGGAGAUCGUCUUCGGACGCCCCUUUUCGCCGGAUUUUGUAGUGCAUGUGGAGAAUCUGUACUACUUUCGGGGGCUCCAGA
.....(((((.......(((((((((....(((......))).((......))))))))))).....(((.......((((((((.((.....)).)))))))).......)))))))). (-32.60 = -33.72 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:14 2006