Locus 183

Sequence ID 2L_DroMel_CAF1
Location 567,454 – 567,574
Length 120
Max. P 0.520688
window273

overview

Window 3

Location 567,454 – 567,574
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.28
Mean single sequence MFE -49.42
Consensus MFE -23.58
Energy contribution -24.11
Covariance contribution 0.53
Combinations/Pair 1.31
Mean z-score -1.76
Structure conservation index 0.48
SVM decision value -0.03
SVM RNA-class probability 0.520688
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 567454 120 - 22407834
UUCUGUGCGUAUCCUGGGCUCCGGAUGGCAAACGGUUGGCCAGCGGUUGCAAAGCGGGCUCUAUAAUCAUCUGGGACCCGGAGACGGGUCAGCAGAAGGGGCGACCCUUGAGUGGGCACA
....((((.(((...((((.(((....((((.(.(((....))).)))))....))))))).....(((((((.((((((....))))))..))))((((....)))))))))).)))). ( -52.70)
>DroVir_CAF1 1230 120 - 1
UGCUGUGCGUCGCCUGGGCACCGGAUGGGAAGCGUCUGGCUAGCGCAUGUAAGGCGGGCAAUAUUAUCAUUUGGGACCCGGAGACGGGUCAGCAGCAGGGCCGGACAUUGACCGGCCACA
((((((((.(((((((.((.(((((((.....)))))))...)).).....))))))))...............((((((....)))))).)))))).((((((.......))))))... ( -57.90)
>DroGri_CAF1 1158 120 - 1
UGCUCUGCGUCGCCUGGGCGCCGGAUGGCCAACGGCUCGCGAGCGCUUGUAAAUCAGGUAACAUCAUUAUCUGGAAUCCGGAGACGGGGCAGCAAGUCGGUCGAACCUUGACCGGCCAUA
.((((.(((..(((..(((........)))...))).)))))))(((.((...((((((((.....))))))))..((((....)))))))))..(((((((((...))))))))).... ( -50.10)
>DroWil_CAF1 8461 120 - 1
UGCUUUGCGUCUCCUGGUCUCCAGAUGGUGAGCUACUUGCCAGUGCCUGCAAAGCAGGGCAGAUAAUAAUAUGGGAUCCAGAGACAGGACAGCAAAAAGGUCGUCCCUUGACUGGGCACA
((((..(((((((.(((..((((..(((..((...))..))).(((((((...))).))))..........))))..)))))))).((((.((......)).))))...).)..)))).. ( -40.80)
>DroMoj_CAF1 969 120 - 1
UGCUGUGCGUCGCCUGGGCGCCGGAUGGCAAGCGUCUGGCGAGCGCCUGUAAGGCAGGAAAAAUUAUUAUUUGGGAUCCAGAGACAGGUCAACAGGUGGGCCGCACACUCAGCGGACACA
.(((((((((((((((..(((((((((.....)))))))))...((((((....(.(((.((((....))))....))).)..))))))...)))))))..)))))....)))....... ( -44.60)
>DroAna_CAF1 9896 120 - 1
UGCUGUGCGUUUCCUGGGCUCCUGAUGGAAAACGCCUGGCCAGCGGCUGCAAGGCGGGCUCUAUAAUCAUCUGGGACCCGGAGACGGGCCAGCAGAAAGGACGCCCGCUAAGUGGACACA
....(((((((..(..((((((....)))....)))..)..)))).(..(..((((((((((....((..((((..((((....))))))))..))..))).)))))))..)..).))). ( -50.40)
>consensus
UGCUGUGCGUCGCCUGGGCUCCGGAUGGCAAACGGCUGGCCAGCGCCUGCAAAGCAGGCAAUAUAAUCAUCUGGGACCCGGAGACGGGUCAGCAGAAGGGCCGAACCUUGACCGGACACA
((((((.((((..(((((..((((((((.......((.((..((....))...)).))........))))))))..))))).)))).).))))).......................... (-23.58 = -24.11 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:23 2006