Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,056,181 – 5,056,299 |
Length | 118 |
Max. P | 0.960616 |
Location | 5,056,181 – 5,056,299 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 70.69 |
Mean single sequence MFE | -23.98 |
Consensus MFE | -14.36 |
Energy contribution | -15.55 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.20 |
Mean z-score | -1.87 |
Structure conservation index | 0.60 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5056181 118 - 22407834 UCAACUGCUUGGCUCCAGGGGAGCAGCUCACCACCACACAGAAAUCUACAUAGUUUAAAGAUACUUUUCAUUCCAGUACAUGCUAGAUAUACAUAUGUACUAGAAUAACGAAAAAUGA ......(((..(((((...)))))))).....................(((..(((...((......))((((.((((((((...........)))))))).))))...)))..))). ( -19.60) >DroSec_CAF1 3278 114 - 1 UCAACUGCUUGGCUCCAUGGGAGCAGCUCACCACCACCCAGCAAUGUACAUAGUUAUAAGAUACUUUUUAUUCCAGUACAUGCUAGAUA----UAUGUACUGGGAUAACGACAAAUGA ..(((((....(((((...))))).(((...........)))........)))))............(((((((((((((((.......----))))))))))))))).......... ( -28.40) >DroSim_CAF1 3224 107 - 1 UCAACUGCUUGGCUCCACGGGAGCAGCUCACCACCAACCAGCAAUCUACAUAGUUAUAGAAUACUUUUCAUUCCAAUACAUGCUAGAUA----UAUGUACAGGGAUAACGA------- ..(((((....(((((...))))).(((...........)))........)))))...(((.....)))(((((..((((((.......----))))))..))))).....------- ( -19.00) >DroYak_CAF1 3298 95 - 1 UCAACUGUUUGGCUCCGGAACAGGAGCUC------------------AAAUAGUAUUAGGUCAUUCUUCGACCAAGUACAUGCCC-ACA----UAUGUAUUAGAACAACAACAAAUUA ...(((((((((((((......))))).)------------------)))))))....((((.......)))).((((((((...-...----))))))))................. ( -28.90) >consensus UCAACUGCUUGGCUCCAGGGGAGCAGCUCACCACCACCCAGCAAUCUACAUAGUUAUAAGAUACUUUUCAUUCCAGUACAUGCUAGAUA____UAUGUACUAGAAUAACGACAAAUGA ......(((..((((.....)))))))..........................................(((((((((((((...........)))))))))))))............ (-14.36 = -15.55 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:13 2006