Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,034,220 – 5,034,340 |
Length | 120 |
Max. P | 0.783785 |
Location | 5,034,220 – 5,034,340 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.28 |
Mean single sequence MFE | -49.13 |
Consensus MFE | -29.34 |
Energy contribution | -29.68 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.37 |
Mean z-score | -1.70 |
Structure conservation index | 0.60 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5034220 120 + 22407834 AGAUGCCUCCGAGAAAGGACAAAAGGGUGAACCCGGUCCAUCCGGACUCCGCGGCGAUACAGGUCCGGCCGGAACGCCCGGUUGGCCAGGAGAGAAGGGUUUGCCCGGUCUGGCUGUUCA .((.(((((((.((..((((....(((....))).)))).))))))((((..((((((....)))(((((((.....)))))))))).))))(((.(((....)))..))))))...)). ( -53.80) >DroVir_CAF1 22161 120 + 1 AGAUGCUUCCGAAAAGGGACAAAAGGGUGAACCCGGUGUCUCAGGACUACGUGGUCAAGAUGGUCUACCCGGAGCUCCAGGUCAACCUGGCGAGAAAGGUUUGCCUGGCAUUGCCGUCCA .((((..((((....((((((...(((....)))..)))))).(((((((........).))))))...))))((.((((((.(((((........))))).))))))....)))))).. ( -46.50) >DroPse_CAF1 20290 120 + 1 AGAUGCUUCCGAAAAGGGACAGAAGGGUGAACCCGGUCUGUCUGGACUGCGCGGUGAUCCUGGAGUAUCCGGUGAGCCUGGACUGCCUGGAGAAAAGGGAUUGCCCGGUAUGGCUGUAUA ..((((..(((.....(((((((.(((....)))..)))))))......((.((..(((((......(((((..((......))..))))).....)))))..))))...)))..)))). ( -46.10) >DroYak_CAF1 18859 120 + 1 UGACGCCUCCGAGAAGGGACAAAAGGGUGAGCCCGGUCUAUCUGGACUUCGCGGCGACACAGGACCGACCGGACCGCCCGGUUGGCCAGGCGAGAAGGGUUCGCCCGGUGUGGCUGUUCA .(((((((((.....)))(((...(((((((((((((((....)))))(((((....)...((.((((((((.....))))))))))..))))...))))))))))..)))))).))).. ( -58.60) >DroMoj_CAF1 22157 120 + 1 CGACGCUUCCGAAAAGGGACAAAAGGGCGAGCCCGGUGUCUCCGGAUUGCGCGGUCAAGAUGGCUUACCCGGUGCCCCUGGACUGCCAGGCGAGAAGGGUUUACCUGGAAUUGCUGUACA ....((.((((....((((((...(((....)))..))))))))))..))((((.(((...((...((((....(.(((((....))))).)....))))...)).....)))))))... ( -43.70) >DroPer_CAF1 20313 120 + 1 AGAUGCUUCCGAAAAGGGACAGAAGGGUGAACCCGGUCUGUCUGGACUGCGCGGUGAUCCUGGAGUAUCCGGUGAGCCUGGACUGCCUGGAGAAAAGGGAUUGCCCGGUAUGGCUGUAUA ..((((..(((.....(((((((.(((....)))..)))))))......((.((..(((((......(((((..((......))..))))).....)))))..))))...)))..)))). ( -46.10) >consensus AGAUGCUUCCGAAAAGGGACAAAAGGGUGAACCCGGUCUAUCUGGACUGCGCGGUGAUACUGGACUACCCGGAGCGCCUGGACUGCCAGGAGAGAAGGGUUUGCCCGGUAUGGCUGUACA ..((((((((......))).....(((((((((((((((....))))).............((....(((((.....)))))...)).........)))))))))))))))......... (-29.34 = -29.68 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:07 2006