| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,032,889 – 5,033,009 |
| Length | 120 |
| Max. P | 0.790412 |
| Location | 5,032,889 – 5,033,009 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.94 |
| Mean single sequence MFE | -31.81 |
| Consensus MFE | -17.16 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5032889 120 - 22407834 CCUUCUGCUCCCUUGAAUCCUUGCACGCCCUUUGCACCUGGCGCACCAGGGUAACCCUUGUCACCCUUCAAUGGCUCAAUCAAACUCAAAUCGCACAGAGCAGGUUUGCCAGGCUCUCCA .....................((((.......))))(((((((.((((((((.((....)).)))))......((((....................)))).))).)))))))....... ( -30.05) >DroVir_CAF1 20833 120 - 1 CCACUAUCACCACGCUCGCCUUUUACACCAGCAGCACCAGGAUAUCCAGGCUCUCCCUUUGGUCCCUUCUCAGGCACAAUUUGGCUCCAGUCGACAAAUGCCGAUUGACCAGGUUUACCC ........(((..(((.((...........))))).((.((....)).)).........(((((...((...((((....(((((....)))))....))))))..))))))))...... ( -24.10) >DroSec_CAF1 17313 120 - 1 CCGUCUGAUCCCCUGAAUCCCUUCACGCCCUUUGCACCUGGCGCACCAGGGUAACCCUUCUCACCCUUCACGGGCUCAAUCAAACUCAAAUCGCAAAGUGCAGGUUUGCCAGGCUCUCCA ..(((((....((((((....)))..((.((((((.(((((....))))).............(((.....)))..................)))))).))))).....)))))...... ( -30.90) >DroSim_CAF1 15603 120 - 1 CCAUCUGAUCCCCUGAAUCCCUGCACGCCCUUUGCACCUGGCGCACCAGGGUAACCCUUGUCACCCUUCAAGGGCUCAAUCAAACUCAAAUCGCAAAGUGCAGGUUUGCCAGGCUCUCCA ...........((((.(..(((((((....(((((.(((((....)))))....((((((........))))))..................))))))))))))..)..))))....... ( -39.40) >DroEre_CAF1 17671 120 - 1 CCGUCUGCUCCACUAAAUCCUUUCACGCCCUUGGCACCUGGCGCGCCAGGGGAACCCUUAUCACCCUUCUCGGCCGCAACGGAAUUCAAAUCGACCAUUGCAGGUCUGCCAGGCUCACCA ..........................(((..(((((((..(((.(((((((((.......)).))))....))))))...))..........((((......))))))))))))...... ( -33.40) >DroYak_CAF1 17527 120 - 1 CCGUCUGCUCCCCUGAAUCCCUGCACGCCCUUGGCACCUGGCAAGCCAGGGUAACCCUUUUCACCCCUCUCGGCCUUAACCAAAUUCAAGUCGACCAUUGCAGGUCUGCCAGGCUCGCCA ..((.(((..............))).))...((((.(((((((..((.((((..........))))...(((((...............)))))........))..)))))))...)))) ( -33.00) >consensus CCGUCUGCUCCCCUGAAUCCCUGCACGCCCUUUGCACCUGGCGCACCAGGGUAACCCUUGUCACCCUUCACGGGCUCAAUCAAACUCAAAUCGAAAAGUGCAGGUUUGCCAGGCUCUCCA ..........................((.....)).(((((((.((((((.....))).....(((.....)))............................))).)))))))....... (-17.16 = -18.10 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:05 2006