Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,030,996 – 5,031,116 |
Length | 120 |
Max. P | 0.594325 |
Location | 5,030,996 – 5,031,116 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.00 |
Mean single sequence MFE | -51.17 |
Consensus MFE | -29.98 |
Energy contribution | -31.06 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.39 |
Mean z-score | -1.56 |
Structure conservation index | 0.59 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5030996 120 + 22407834 AGAAUUGUACGGCCGGAUAUGCGGGCUGUGUGCCCAAGUGCAUAGCGGAGAAGGGCAACCGUGGUCUGCCGGGCCCUCUUGGACCCACGGGAUUGAAGGGCGAAAUGGGUUUCCCUGGCA ...........(((((........((((((..(....)..))))))(((((..((((((....)).))))..(((((.(..(.((....)).)..))))))........)))))))))). ( -45.70) >DroVir_CAF1 19027 120 + 1 AGAACUGUACAUCCGGCUUUGCGGGCUGUAUGCCCAAGUGCAUUGCCGAGAAGGGUAAUCGCGGCCUGCCGGGUCCCGAGGGUCAGACGGGACCCAAGGGUAUUAAGGGUUAUUCGGGCC ....(((...(((((((...((((((.....))))..(((.((((((......))))))))).))..)))((((((((.........))))))))...........))))....)))... ( -48.40) >DroPse_CAF1 17124 120 + 1 AAAACUGUACAGCCGGAUACGCCGGCUGUGUGCCCAAAUGCAUUGCCGAGAAGGGUAACCGCGGUCUGCCAGGUCCAUUGGGUCCCACCGGACCCAAGGGUGUCUCGGGCUUUCCGGGUC .......(((((((((.....))))))))).((((....((.(((((......)))))..))((...(((.((.((.((((((((....)))))))).))...))..)))...)))))). ( -53.40) >DroMoj_CAF1 19012 120 + 1 AGAACUGCACUGCUGGGUAUGCGGGCUGCGUGCCCAAGUGUAUUGCCGAGAAGGGUAAUCGUGGUCUGCCCGGACCCGAGGGUCAGACUGGACCGAAGGGUCUGCAAGGUUAUGCGGGAC ....(((((..(((((((((((.....))))))))...(((((((((......))))))...(((((((((........))).))))))(((((....)))))))).)))..)))))... ( -51.40) >DroAna_CAF1 17036 120 + 1 AGAACUGUACGGCCGGAUACGCGGGCUGUGUGCCCAAGUGCAUAGCGGAGAAGGGCAACCGGGGUCUGCCAGGACCCUCGGGCCCCUCAGGACCAAAGGGUGCGCAAGGAUUCCCCGGCA ...........(((((......((((((((..(....)..)))))).(((..((((..(((((((((....)))))).))))))))))....))...((((.(....).)))).))))). ( -54.70) >DroPer_CAF1 17147 120 + 1 AAAACUGUACAGCCGGAUACGCCGGCUGUGUGCCCAAAUGCAUUGCCGAGAAGGGUAACCGCGGUCUGCCAGGUCCAUUGGGUCCCACCGGACCCAAGGGUGUCUCGGGCUUUCCGGGUC .......(((((((((.....))))))))).((((....((.(((((......)))))..))((...(((.((.((.((((((((....)))))))).))...))..)))...)))))). ( -53.40) >consensus AGAACUGUACAGCCGGAUACGCGGGCUGUGUGCCCAAGUGCAUUGCCGAGAAGGGUAACCGCGGUCUGCCAGGUCCCUUGGGUCCCACCGGACCCAAGGGUGUCAAGGGUUUUCCGGGCC ....(((...((((......(((((((((((((((.................)))))..)))))))))).....(((..((((((....))))))..))).......))))...)))... (-29.98 = -31.06 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:04 2006