Locus 182

Sequence ID 2L_DroMel_CAF1
Location 561,739 – 561,840
Length 101
Max. P 0.531628
window272

overview

Window 2

Location 561,739 – 561,840
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.72
Mean single sequence MFE -24.73
Consensus MFE -17.53
Energy contribution -17.85
Covariance contribution 0.32
Combinations/Pair 1.19
Mean z-score -1.68
Structure conservation index 0.71
SVM decision value -0.00
SVM RNA-class probability 0.531628
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 561739 101 - 22407834
CAGGAAUCACCACCACAGAGUGCUCCCAAACAGGAUUCCCCACCAAAGGGUGCUCCCAAACAGGAUUCCCCACCAAAGGGUGCUCCCAAACAGGAUUCACC
...(((((.........(((..(((.......(((.(((........(((....))).....))).)))........)))..)))........)))))... ( -24.01)
>DroSec_CAF1 1966 101 - 1
CAGGAAUCGCCACCACAGAGUGCUCCCAAGCAGGAUUCAGCGCCUAAGGGUGCUCCCAAACAGGAUUCACCACCAAAAACUGUUUCUAAACACGAUUCACC
...((((((.....((((..((((....))))((((((((((((....))))))........))))))...........)))).........))))))... ( -23.74)
>DroSim_CAF1 2017 101 - 1
CAGGAAUCGCCACCACAGAGUGCUCCCAAACAGGAUUCAGCGCCUAGGGGUGCUCCCAAACAGGAUUCACCACCAAAGGGUGCUCCCAAACAGGAUUCUCC
..((((((.........((((.((.......)).))))(((((((.((((((.(((......)))..)))).))...))))))).........)))))).. ( -29.50)
>DroEre_CAF1 1973 101 - 1
CAGGAAUCACCAGCACAGAGUGCUCCCAAACAGGAUUCAGCGCCUAAAAGUGCUCCCAAACAGGAUUCCCCACCAAAGGGUGUUCCCAAGCAGGAUUCAAC
...(((((...(((((((.(((((.((.....))....)))))))....)))))........(((...(((......)))...))).......)))))... ( -24.80)
>DroYak_CAF1 1992 101 - 1
CAGGAAUCACCACCACAGAGUGCUCCCAAACAGGAAUCACCACCGCAGAGUGCUCCCAAACUGGAAUCACCACCACAGAGUGCUCCCAAACAGGAUUCAGC
...(((((.........(.(((.(((......)))..))))......(((..(((......(((.....))).....)))..)))........)))))... ( -21.60)
>consensus
CAGGAAUCACCACCACAGAGUGCUCCCAAACAGGAUUCAGCGCCUAAGGGUGCUCCCAAACAGGAUUCACCACCAAAGGGUGCUCCCAAACAGGAUUCACC
...(((((.........(((..(((.......(((....(((((....))))))))......((.....))......)))..)))........)))))... (-17.53 = -17.85 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:18 2006