Locus 1818

Sequence ID 2L_DroMel_CAF1
Location 5,019,322 – 5,019,421
Length 99
Max. P 0.820696
window2921

overview

Window 1

Location 5,019,322 – 5,019,421
Length 99
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 86.36
Mean single sequence MFE -21.00
Consensus MFE -19.70
Energy contribution -20.30
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.94
SVM decision value 0.68
SVM RNA-class probability 0.820696
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5019322 99 - 22407834
AU-UUCCCCAACCGCAUCUGCCACAUUUUCACUUCGGAAUCG-CCUCAACUUCAUUCCGAGGUCCAGUGAGCGUGUUCUAUGCACUCGCUCAAUUGACUGG
..-..........((....)).........((((((((((..-..........))))))))))(((((((((((((.....))))..)))).....))))) ( -23.80)
>DroSec_CAF1 3626 100 - 1
UUUUUCCCCAACCGCAUCUGCCACAUUUUCACUUCGGAAUCG-CCUCAACUUCAUUCCGAGGUCCAGUGAGCGUGUUCUAUGCACUCGCUCAAUUGACUGG
.............((....)).........((((((((((..-..........))))))))))(((((((((((((.....))))..)))).....))))) ( -23.80)
>DroSim_CAF1 1951 99 - 1
UU-UUCCCCAACCGCAUCUGCCACAUUUUCACUUCGGAAUCG-CCUCAACUUCAUUCCGAGGUCCAGUGAGCGUGUUCUAUGCACUCGCUCAAUUGACUGG
..-..........((....)).........((((((((((..-..........))))))))))(((((((((((((.....))))..)))).....))))) ( -23.80)
>DroEre_CAF1 3608 98 - 1
GU-UUCCCCCGCC-CAUUUGCCACAUUUUCACUUCUGAAUAC-CCUCAACUUCAUUCCGAGGUCCAGUGAGCGUGUUCUAUGCACUCGCUCAAUUGACUGG
..-.....(((..-((.(((................((((((-.(((((((((.....)))))....)))).))))))...((....)).))).))..))) ( -17.60)
>DroYak_CAF1 3646 77 - 1
------------------------AUUUUCACUUCUAAAUCCCCCUCAACUUCAUUCCGAGGUCCAGUGAGCGUGUUCUAUGCACUCGCUCAAUUGACUGG
------------------------...................((((...........)))).(((((((((((((.....))))..)))).....))))) ( -16.00)
>consensus
UU_UUCCCCAACCGCAUCUGCCACAUUUUCACUUCGGAAUCG_CCUCAACUUCAUUCCGAGGUCCAGUGAGCGUGUUCUAUGCACUCGCUCAAUUGACUGG
..............................((((((((((.............))))))))))(((((((((((((.....))))..)))).....))))) (-19.70 = -20.30 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:58 2006