Locus 1817

Sequence ID 2L_DroMel_CAF1
Location 5,016,823 – 5,016,925
Length 102
Max. P 0.788704
window2920

overview

Window 0

Location 5,016,823 – 5,016,925
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 75.95
Mean single sequence MFE -43.68
Consensus MFE -23.07
Energy contribution -22.77
Covariance contribution -0.30
Combinations/Pair 1.35
Mean z-score -1.87
Structure conservation index 0.53
SVM decision value 0.58
SVM RNA-class probability 0.788704
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5016823 102 + 22407834
CCAUCGGGUCCGGCUGCUCCAACUUUGCCUGGCUCGCCGGGAAUACCCGCUGGACCGGGCAGACCUUUGUGACCAGCCCGUCCGGGGUUACCUUGCAAGCCC
....((((.(.(((((.(((((.(((((((((..((.((((....)))).))..)))))))))...))).)).))))).)))))(((((........))))) ( -45.90)
>DroPse_CAF1 1133 102 + 1
CCGUCGGGACCAGGCCUGCCUGUCUGGCCGGGCUCUCCGGGACUGCCUUGCGUGCCGCGAAUACCCUUGAAUCCCGGUUUUCCUGGCCUUCCCUGCACGCCC
..((.((((.((((....))))...(((((((....((((((.....(((((...)))))...(....)..))))))....))))))).)))).))...... ( -40.00)
>DroSec_CAF1 1133 102 + 1
CCAUCGGGUCCGGCUGCUCCAACUUUGCCUGGCUCGCCGGGAAUACCCGCUGGACCGGGCAGACCUUUGUGACCAGCCCUUCCGGGGUUACCUUUCAAGCCC
....((((...(((((.(((((.(((((((((..((.((((....)))).))..)))))))))...))).)).)))))..))))(((((........))))) ( -45.30)
>DroEre_CAF1 1133 102 + 1
CCCCUGGGUCCGGGUGCUCCGACUUUGCCUGGCUCGCCGGGAAUACCCGGUGGACCGGGCAGACCUUUGUGACCAGCCCUUCCGGGAUUUCCCUGCAAACCC
..((((((...((((..(((((.(((((((((..(((((((....)))))))..)))))))))...))).))...)))).))))))................ ( -48.00)
>DroYak_CAF1 1154 102 + 1
CCAUCGGGUCCGGGUGCUCCAACUUUGCCUGGCUCGCCGGGAAUACCCGCUGGACCGGGCAGACCUUUGUGACCAGCCCUGCCGGGAUUGCCUUGCAAACCC
.....((((..((((..(((((.(((((((((..((.((((....)))).))..)))))))))...))).))...))))(((.(((....))).))).)))) ( -42.90)
>DroPer_CAF1 1133 102 + 1
CCGUCGGGACCAGGCCUGCCUGUCUGGCCGGGCUCUCCGGGACUGCCUUGCGUGCCGCGAAUACCCUUGAAUCCCGGUUUUCCUGGCCUUCCCUGCACGCCC
..((.((((.((((....))))...(((((((....((((((.....(((((...)))))...(....)..))))))....))))))).)))).))...... ( -40.00)
>consensus
CCAUCGGGUCCGGGUGCUCCAACUUUGCCUGGCUCGCCGGGAAUACCCGCUGGACCGGGCAGACCUUUGUGACCAGCCCUUCCGGGAUUUCCCUGCAAGCCC
.....((((.((((...(((........((((.((((.(((....((((......))))....)))..))))))))........)))....))))...)))) (-23.07 = -22.77 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:57 2006