Locus 1816

Sequence ID 2L_DroMel_CAF1
Location 5,014,696 – 5,014,816
Length 120
Max. P 0.661537
window2919

overview

Window 9

Location 5,014,696 – 5,014,816
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.06
Mean single sequence MFE -50.85
Consensus MFE -23.42
Energy contribution -25.27
Covariance contribution 1.84
Combinations/Pair 1.51
Mean z-score -1.70
Structure conservation index 0.46
SVM decision value 0.27
SVM RNA-class probability 0.661537
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5014696 120 - 22407834
CUUAAGGGCUUCCAGGGUGACCAAGGACCACGAGGUCCUCCGGGCAUAACAUUGCCCGCCGAGAAGGGUGACGAAGGCGUUGCUGGACUCGAUGGACGAGCAGGACGUCCGGGACACUUU
...((((..((((.((....)).((((((....)))))).((((((......)))))).((((...((..(((....)))..))...))))..(((((.......)))))))))..)))) ( -48.90)
>DroVir_CAF1 4368 120 - 1
CCCAAGGGCAUACAGGGCGACAAGGGAUUGCGGGGCGUUCCCGGUGCAAGACUCGUUGCCGAACGCGGCGACGAAGGUGACCAAGGAUAUGACGGACUUGCCGGACGUCCUGGACGCUAU
......(((...(((((((.((.((((.(((...))).))))(((.((...((((((((((....)))))))).)).))))).......)).(((.....)))..)))))))...))).. ( -47.10)
>DroSec_CAF1 3481 120 - 1
CUUAAGGGAUUCCAGGGUGACCAAGGACCACGAGGUCCACCGGGCAUAACAUUGCCAACCGAGAAAGGUGACGAAGGCGUUGCUGGACUCGAUGGACGAGCAGGACGUCCGGGACACUUU
...((((..((((.((....))..(((((....)))))....((((......))))...((((...((..(((....)))..))...))))..(((((.......)))))))))..)))) ( -46.10)
>DroEre_CAF1 4247 120 - 1
CCUAAGGGUUUCCCGGGUGACCAAGGACCUCGAGGUGCUCCGGGCAUAACAAUGCCGGCGGAGAGAGGUGAAGAGGGUGUUGCUGGACUCGACGGACGCCCAGGUCGUCACGGCUACCCU
....(((((...((((..((((....(((((......((((((((((....)))))..))))).))))).....((((((..(((.......))))))))).))))..).)))..))))) ( -52.80)
>DroYak_CAF1 4989 120 - 1
AUUAAGGGCUUCCAGGGUGACCAAGGAUCUCGAGGUCGUCCGGGCAUAACACUGCCGGCGGAGAAAGGUGACGAGGGCGUUGCUGGUCUCGACGGACGCAUCGGUCGCCCCGGACGCAUU
.......((.(((.((((((((...((((....))))(((((((((......))))....((((..((..(((....)))..))..))))..))))).....)))))))).))).))... ( -57.50)
>DroAna_CAF1 4044 120 - 1
CUCAAGGGCGUUCAAGGUGACAGGGGAUACCGAGGUCUGCCAGGCAUACAGCUGACGGCCGAACGAGGCUUGGAUGGUGAUGCAGGAUACGAUGGACGUCCCGGUCGCCCAGGACGCCCG
.....((((((((..((((((..(((((.(((..((...((..((((.((.(...(((((......))).))...).)))))).))..))..)))..))))).))))))..)))))))). ( -52.70)
>consensus
CUUAAGGGCUUCCAGGGUGACCAAGGACCACGAGGUCCUCCGGGCAUAACACUGCCGGCCGAGAAAGGUGACGAAGGCGUUGCUGGACUCGACGGACGAGCAGGACGUCCCGGACACUUU
.....((((.(((.(((((.((..(((((....))))).(((((((......))))...((((...(((((((....)))))))...)))).))).......)).))))).))).)))). (-23.42 = -25.27 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:56 2006