Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,012,923 – 5,013,023 |
Length | 100 |
Max. P | 0.999832 |
Location | 5,012,923 – 5,013,023 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 66.00 |
Mean single sequence MFE | -33.07 |
Consensus MFE | -18.60 |
Energy contribution | -19.60 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.14 |
Mean z-score | -2.41 |
Structure conservation index | 0.56 |
SVM decision value | 4.19 |
SVM RNA-class probability | 0.999832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5012923 100 - 22407834 ACAGAUGGCAAUUACAGGGCAAACUGGCAAUCCGGCCGGUCUUCCAGUCCUGGCUCUCAGUCCAGUCCUGGUUCCAGCUCCGGAUCCUGGUCAUCUGGAU .((((((((.....((((((......)).((((((..((....((((..(((((.....).))))..))))..))....))))))))))))))))))... ( -39.80) >DroSim_CAF1 2887 82 - 1 ACAGAUGGCAAUUACAGGUCAAGCUGGACUUCGGGCGCAGCUU------------------CAAGUCCUGGUUCCAACUCCGGAUCCUGGUCAUCUGGAU .((((((((.....((((.((((((((.(....).).))))))------------------...).))))..(((......))).....))))))))... ( -30.00) >DroYak_CAF1 2711 94 - 1 ACAGAUUUCAAUUAUAGGUCAGGCUGGUCAGCCGGCCAGACAUCCAGCCCUGGCUCCCAGUCCAAUCCCGGAUACA------UAUCCCGGUCAUCUGGAC .................(((.((((((....)))))).)))....(((....))).((((......((.((((...------.)))).))....)))).. ( -29.40) >consensus ACAGAUGGCAAUUACAGGUCAAGCUGGACAUCCGGCCAGACUUCCAG_CCUGGCUC_CAGUCCAGUCCUGGUUCCA_CUCCGGAUCCUGGUCAUCUGGAU .((((((((........(((..(((((....)))))..)))..........................(.((.(((......))).)).)))))))))... (-18.60 = -19.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:55 2006