Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,011,024 – 5,011,135 |
Length | 111 |
Max. P | 0.672114 |
Location | 5,011,024 – 5,011,135 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -31.23 |
Consensus MFE | -27.56 |
Energy contribution | -28.00 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.49 |
Structure conservation index | 0.88 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5011024 111 - 22407834 UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUUCUGUCUACUUUUCGUAGUGAGUAGCACUGAUAGGGCUGGCAAAAUAGCUAUAUUUCUU ..........(((((((((((((((.(.....).))))))))))..(((((((....((((.....)))).)))))))......)))))((((......))))........ ( -34.20) >DroSim_CAF1 566 110 - 1 UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUUCUGUCUACGUUUCGUAGAGAGUGUCACUGAUAGGGCUGGCAAAACAGCUAU-UUUUUU ..((((((..((...((((((((((.(.....).))))))))))..))........((((((...)))))))))))).........(((((......)))))..-...... ( -31.60) >DroEre_CAF1 401 110 - 1 UCACACUUUUGCCUUAGUGUUUGUCCGUGUGACUGGCAAAUACUCCGCUACUGCUGUCUACGUUUUGUUGUGAGUGGCACUGAUAGGACUGGCAAAACAGCUUUG-UUUUU ......(((((((..(((.((((((.((((.(((.((((..((...((....)).(....)))....)))).))).)))).))))))))))))))))........-..... ( -28.80) >DroYak_CAF1 614 110 - 1 UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUGCUGUCUACGUUUCGCUGUGAGUGGCACUGAUAAGGCUGGCAAAACAGCUAUG-UUUUU ..........(((((((((((((((.(.....).))))))))))..((((((((.((.........)).)).))))))......)))))((((......))))..-..... ( -30.30) >consensus UCACACUUUUGCCUUGGUGUUUGUCCGUGUGACUGGCAAAUACCCCGCUACUGCUGUCUACGUUUCGUAGUGAGUGGCACUGAUAGGGCUGGCAAAACAGCUAUG_UUUUU ......(((((((..((((((((((.(.....).))))))))))..((((((.(...((((.....)))).)))))))............))))))).............. (-27.56 = -28.00 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:54 2006