Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,005,282 – 5,005,387 |
Length | 105 |
Max. P | 0.843272 |
Location | 5,005,282 – 5,005,387 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 84.38 |
Mean single sequence MFE | -43.63 |
Consensus MFE | -33.66 |
Energy contribution | -35.57 |
Covariance contribution | 1.90 |
Combinations/Pair | 1.03 |
Mean z-score | -2.71 |
Structure conservation index | 0.77 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5005282 105 + 22407834 GAUUCAAUGAGAGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG .............(((((.(....).)).)))..((((((((....))))))))((..(((((((((((.((.(((......))).)).)))))))))))..)). ( -48.00) >DroSec_CAF1 10967 105 + 1 GAUUCAAUGAGCGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCACGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG .............(((((.(....).)).)))..((((((((....))))))))((..((((((((((((((.(((......))).))))))))))))))..)). ( -52.00) >DroSim_CAF1 11076 105 + 1 GAUUCAAUGAGCGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG .............(((((.(....).)).)))..((((((((....))))))))((..(((((((((((.((.(((......))).)).)))))))))))..)). ( -48.00) >DroEre_CAF1 11217 105 + 1 GAUUGAAUGAGAGGGCAACCGCAAGUCUCACCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCGUUCGAUUUGCCGCCGAGUUUGGGG ..(((..(((((((....)).....))))).)))((((((((....))))))))((..((((((((((((((((......).))))...)))))))))))..)). ( -46.00) >DroYak_CAF1 11333 105 + 1 GAUUCAGUGAGAGGGCAACCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCCCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG ......((((((((....)).....))))))...((((((((....))))))))((..(((((((((((.((.(((......))).)).)))))))))))..)). ( -49.10) >DroAna_CAF1 10889 91 + 1 AAAUAAAAGAGAGGCCACCCACAAGCCCCACAAAGUUGAGCAACCCCGCUUAGCCCUGAACUUUGUCUCC-------------UACGGCGUCUACGAGU-UGGGA .....((((.(.(((.........))).).((..(((((((......)))))))..))..))))...(((-------------((...((....))...-))))) ( -18.70) >consensus GAUUCAAUGAGAGGGCAGCCGCAAGUCUCGCCAAGUUGAGCAACCGUGCUUAGCCCUGAACUCGGUGGCUCGGCAGUAGCAUUUGAUGUGCCGCCGAGUUUGGGG ............((....))..............(((((((......)))))))(((((((((((((((.((.(((......))).)).))))))))))))))). (-33.66 = -35.57 + 1.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:53 2006