Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,003,789 – 5,003,881 |
Length | 92 |
Max. P | 0.879367 |
Location | 5,003,789 – 5,003,881 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.89 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -18.73 |
Energy contribution | -19.73 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.72 |
Structure conservation index | 0.81 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879367 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5003789 92 - 22407834 UC---AUAUUCCUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC ..---............(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.00) >DroSec_CAF1 9451 92 - 1 UC---AUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC ..---............(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.00) >DroSim_CAF1 9539 92 - 1 UC---AUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC ..---............(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.00) >DroEre_CAF1 9667 92 - 1 UU---GUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCAGUAC ..---.........((((---(.(..((((((.-...((((((((((...........)))))..)))))(((((...))))).))))))..)))))). ( -25.20) >DroYak_CAF1 9739 92 - 1 UC---GUAUUCAUUUGCU---GCAAGCAGUGCC-CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC ..---(((......)))(---(((((((((((.-...((((((((((...........)))))..)))))(((((...))))).)))))).)).)))). ( -22.70) >DroAna_CAF1 9294 94 - 1 CCAUAAUAUGCACUUGCCGAGGCAAGCAGUGCCCCCAAAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGGGC-----CAUGCAUUGUCUUUUUUU .........((....)).((((((((((..(((((.(((..((((((...........))))))..))).).))))-----..))).)))))))..... ( -24.30) >consensus UC___AUAUUCAUUUGCU___GCAAGCAGUGCC_CCAGAAAGUAUGCCACAUUAUUCCGCAUAUCCUUUCGAGUGCUCCACUCUGCAUUGUCUCUGUAC .............((((....))))(((((((.....((((((((((...........)))))..)))))(((((...))))).)))))))........ (-18.73 = -19.73 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:52 2006