Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,995,906 – 4,996,022 |
Length | 116 |
Max. P | 0.518241 |
Location | 4,995,906 – 4,996,022 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.84 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -12.98 |
Energy contribution | -13.50 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.15 |
Mean z-score | -2.32 |
Structure conservation index | 0.52 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4995906 116 - 22407834 GUCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUUGCCCUAAGUAGCUUGCUACCUGAGCAACCUAACAAAUCAGUUCAAACUAAUGACCACUUAAUGAGUUGGCAAAUCC ((((....(((((...((((((((((((..(((((((.....))..)))))..))))))))..))))............(.(((......))).)....)))))..))))...... ( -26.70) >DroSec_CAF1 1689 107 - 1 GCCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUUGCCCUAAGUAGUUUG---------CACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGUAAAUCC ((((....(((((..((((.((((((..((.....)).))))))))))(((((((---------.((............)).)))))))..........)))))..))))...... ( -23.40) >DroSim_CAF1 1702 91 - 1 GCCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUU-------------------------ACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGCAAAUCC ((((....(((((.......((((((..((.....)).))-------------------------)))).........((.(((......))).))...)))))..))))...... ( -19.00) >DroEre_CAF1 1672 112 - 1 GCCAUAUAUCAUUUCCUUAUGGGAAGCACCUUACUGGAUUUCCCUUAUUAGUU----ACCUGAGCACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGCAAAUCC ((((....(((((.......((((((..((.....)).))))))(((((((((----...(((((..............))))))))))))))......)))))..))))...... ( -27.14) >DroYak_CAF1 1690 116 - 1 GCCAUAUAUCAUUGCCUUGUGGGUAGCACCUUACUGGAUUUCCCUUAUUAGUUAGCUACCUGAGCACCCUAACAAAUCAGUUCAAACAAAUCACCUCUCAAUGAGUUGGCAAAUCC ((((....((((((....(((((((((..((....((.....)).....))...))))))(((((..............))))).......)))....))))))..))))...... ( -28.24) >consensus GCCAUAUAUCAUUUCCUUGCGGGUAGCACCUUACUGGAUUGCCCUAAGUAGUU_G__ACCUGAGCACCCUAACAAAUCAGUUCAAACUAAUGACCUCUCAAUGAGUUGGCAAAUCC ((((....(((((.......((((((..((.....)).))))))..........................(((......))).................)))))..))))...... (-12.98 = -13.50 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:50 2006