Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 561,315 – 561,423 |
Length | 108 |
Max. P | 0.533955 |
Location | 561,315 – 561,423 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.10 |
Mean single sequence MFE | -34.84 |
Consensus MFE | -17.80 |
Energy contribution | -18.97 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.32 |
Mean z-score | -1.93 |
Structure conservation index | 0.51 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 561315 108 - 22407834 ACGGCAACA---------GUUCCGGUAGCACCUGCCACUCCUGCUGAGGCGCCAUCUCCUCUGGCUCCCUCCACUCCGCCAUCGACUCCCACCUCGGUGCCGCCCUCUGCAGCGACA ..(....).---------.....(((((...)))))..((((((.((((.((((.......))))...........((.((((((........)))))).)).)))).)))).)).. ( -31.40) >DroSec_CAF1 1617 108 - 1 ACGGCCCCA---------GUUCCGGUGGCACCUGCCACUCCUGCUGAGGCGCCAUCUCCCCUGGCUCCUUCCACUCCGCCAUCGACUCCCACCUCGGUGCCGCCCUCUGCAGCGGCA ..(((..((---------((...((((((....))))))...))))(((.((((.......)))).)))........)))(((((........)))))(((((........))))). ( -40.90) >DroSim_CAF1 1617 108 - 1 ACUGCCCCA---------GUUCCGGUGGUACCUGCCACUCCUGCUGAGGCGCCAUCUCCCCUGGCACCUUCCACUCCGCCAACGACUCCCACCUCGGUGCCGCCCUCUGCAGCGGCA ...(((.((---------((...((((((....))))))...)))).)))(((.........((((((...........................))))))((........))))). ( -35.93) >DroEre_CAF1 1594 108 - 1 ACGGCCCCA---------GUUCCGUUGGCACCUGCCACUCCAGCUGAGCCGCCAUCUCCUUUGGCUCCGUCCACUCCGCCAUCGACUCCCACAUCCGUGCCACCAUCUGCAGCGGCA ..(((..((---------(((....((((....))))....))))).)))((((.......))))..........((((....((....(((....)))......))....)))).. ( -26.80) >DroYak_CAF1 1520 108 - 1 ACGGCCCCA---------AUUCCGUUGGCGCCUGCCACUCCUGUUGAGGCGCCAUCUCCUUUGGCUCCCUCCACGCCGCCAACGACUCCCACAUCCGUGCCACCAUCUGCAGCGGCA ..((..(((---------(......((((((((.(.((....)).)))))))))......))))..))......(((((..(((...........)))((........)).))))). ( -34.30) >DroPer_CAF1 1292 117 - 1 GCUGCCCCGCCGUCAGCUGCUCCUGCAGUAGCUCCUCCGUCACCAGAGGCGCCGUCGCCGAUGGUUCCAGCUACUCCGCCAUCGACCCCUUCGUCAGCUCCACCAUCGGCAUUAGCA ((((....(.((...(((((....))))).((.((((........)))).)))).)(((((((((...((((.....(....)(((......)))))))..)))))))))..)))). ( -39.70) >consensus ACGGCCCCA_________GUUCCGGUGGCACCUGCCACUCCUGCUGAGGCGCCAUCUCCUCUGGCUCCCUCCACUCCGCCAUCGACUCCCACCUCGGUGCCACCAUCUGCAGCGGCA ..(((.............((...((((((....))))))...))...((.((((.......)))).)).........)))..................(((((........))))). (-17.80 = -18.97 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:13 2006