Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,987,212 – 4,987,332 |
Length | 120 |
Max. P | 0.569833 |
Location | 4,987,212 – 4,987,332 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.54 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -29.64 |
Energy contribution | -29.25 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.06 |
Mean z-score | -1.29 |
Structure conservation index | 0.88 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4987212 120 + 22407834 ACGCUCGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGUGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUUUAUAU ((..(((((..((.(((((((.(((.((((.....)))).))).))))))))).....(((((((((((((..........)))))).)))))..)).)))))...))............ ( -33.00) >DroVir_CAF1 7320 119 + 1 ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCGAGUGGUGGUGAUGCUGAAAGUGUCUUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAAU-UUAU .((..(((((...(((((((.....(((((...((((((...(((((.(((((.....)))))))))))))))).)))))....)))))))..)))))..)).............-.... ( -34.90) >DroGri_CAF1 7826 119 + 1 ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCGAGUGGUGGUGAUGCUGAAAGUGUCUUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU-AUAU .((..(((((...(((((((.....(((((...((((((...(((((.(((((.....)))))))))))))))).)))))....)))))))..)))))..)).............-.... ( -34.90) >DroWil_CAF1 12343 119 + 1 ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGUGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU-AUGA ((((((.....((.(((((((.(((.((((.....)))).))).)))))))))...))))))..(((((((..........)))))))(((((((..((.......))..)))))-)).. ( -32.90) >DroMoj_CAF1 8269 119 + 1 ACGCUGGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCGAGUGGUGGUGAUGCUGAAAGUGUCUUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU-AUAU .((.((((((...(((((((.....(((((...((((((...(((((.(((((.....)))))))))))))))).)))))....)))))))..)))).)))).............-.... ( -34.20) >DroAna_CAF1 8736 120 + 1 ACGCUCGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGCGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUUUAUAU ((..(((((..((.(((((((.(((.((((.....)))).))).))))))))).......(((((((((((..........)))))).))))).....)))))...))............ ( -32.60) >consensus ACGCUUGUGAUGCCAUCGCCAACACCUGGUAAGGAAUCAAGUGGUGGUGAUGCUGAAAGUGUCGUACCCGAUUCAGCUAGUUUGGGUGAUGAUUUACACAUGAAUAGUAAGAAUU_AUAU (((((......((.(((((((.(((.((((.....)))).))).)))))))))....)))))..(((((((..........)))))))....(((((.........)))))......... (-29.64 = -29.25 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:49 2006