| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,980,985 – 4,981,090 |
| Length | 105 |
| Max. P | 0.654126 |
| Location | 4,980,985 – 4,981,090 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.01 |
| Mean single sequence MFE | -41.90 |
| Consensus MFE | -26.59 |
| Energy contribution | -26.87 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4980985 105 + 22407834 UU---CAGCCGCAGCACCGGCACUGGAGCCCGAUGGCGUGGAUGUGGAGGCUGCCUGUUCGAAAAACAGAGCCACUGCGGCGGACACAUCGUUGGCACAGGCAGACAA ..---..((((((((..(.((((((..(((....))).))).))).)..)))))(((((.....))))).((((..(((..(....)..)))))))...)))...... ( -37.20) >DroSec_CAF1 1303 105 + 1 UU---CAGCUGCAGCAGCGGCACUGGAUCCCGAUGCCGUCGAUGUGGAGGCUCCCUGUUCGAAAAACAGAGCCACUGCGGCAGACACAUCGUUCGCACAGGCAGACAA ..---..(((((.((.((((((.(((...))).))))))(((((((..(((((..((((.....))))))))).(((...))).)))))))...))....)))).).. ( -38.50) >DroSim_CAF1 1303 105 + 1 UU---CAGCUGCAGCAGCGGCACUGGUUCCCGAUGCCGUGGAUGUGGAGGCUCCCUGUUCGAAAAACAGAGCCACUGCGGCGGACACAUCGUUGGCACAGGCAGACAA ..---...(..((...((((((.(((...))).))))))...))..).(((((..((((.....))))))))).((((.((.(((.....))).))....)))).... ( -38.00) >DroEre_CAF1 1295 105 + 1 UU---GAGCUGCAGCACCAGCACUGGAGCCCGCCGCCGUGGAUGUGGAGGCUGCCUGCUCGAAAAACAGAGCCACUGCAGCAGACACAUCGUUGGCACAGGCAGACAA ..---..(((((.((.(((....))).)).....((((..((((((...(((((..((((........))))....)))))...))))))..))))....)))).).. ( -42.20) >DroYak_CAF1 1318 105 + 1 UU---CAGCUGCAGCACCAGCACUGGAGCCCGCCGCCGUGGAUGUGGACGCUGCCUGCUCAAAAAACAGAGCCACUGCGGCGGACACAUCGUUGGCACAGGCAGACAA ((---(((.(((.......))))))))(((.(..((((..((((((..((((((..((((........))))....))))))..))))))..)))).).)))...... ( -45.70) >DroAna_CAF1 1279 90 + 1 GGGGGCAGCUGGUGCAGCGCCA------------------GAUGUGGAUGCAGCCUGCUCGAAGAAAAGAGCAACGGCGGCGGCCACAUCGUUGGCGCAGGCACCCAG (((.((.((....)).((((((------------------(((((((.(((.((((((((........)))))..))).))).)))))))..))))))..)).))).. ( -49.80) >consensus UU___CAGCUGCAGCACCGGCACUGGAGCCCGAUGCCGUGGAUGUGGAGGCUGCCUGCUCGAAAAACAGAGCCACUGCGGCGGACACAUCGUUGGCACAGGCAGACAA .......((((......))))...................((((((...(((((..((((........))))....)))))...))))))(((.((....)).))).. (-26.59 = -26.87 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:42 2006