Locus 1803

Sequence ID 2L_DroMel_CAF1
Location 4,977,694 – 4,977,794
Length 100
Max. P 0.522982
window2904

overview

Window 4

Location 4,977,694 – 4,977,794
Length 100
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 78.47
Mean single sequence MFE -26.19
Consensus MFE -14.99
Energy contribution -15.33
Covariance contribution 0.34
Combinations/Pair 1.40
Mean z-score -1.58
Structure conservation index 0.57
SVM decision value -0.02
SVM RNA-class probability 0.522982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4977694 100 + 22407834
UGCUAAUUCAAAAAGGUAUGUGCCUAUUAAGUAUCAAUUAACAUUUCUCGUAGUUCCGUGCUUCAAGGCUUUGCUGAGCAAGGGCUUGGGAUUGGCAAUU
(((((((((....((((....))))...((((((.(((((.(.......))))))..))))))((((.((((((...)))))).)))))))))))))... ( -27.60)
>DroSec_CAF1 103 99 + 1
CGCUA-UUCAAAUGGGUCUGCACCUAUUAACUAUUAAUUUACAUUCCUCGCAGUUCCCUGCUUCAAGGCUUUGCUGAGCAAGGGGCUGGGAUUAGCCAUU
.((((-....(((((((....)))))))...................((.(((((((.(((((...(((...)))))))).))))))).)).)))).... ( -28.90)
>DroSim_CAF1 103 100 + 1
CGCUAAUUCAAAUGGGUCUGUACCUAUUAACUAUUAAUUAACAUUCCUCACAGUUCCCUGCUUCAAGGCUUUGCUGAGCAAGGGCCUGGGAUUGGCCAUU
.((((((((.(((((((....)))))))......................(((..((.(((((...(((...)))))))).))..))))))))))).... ( -29.20)
>DroEre_CAF1 109 99 + 1
CGCUAAUUCGAAUGGGUCUGAAAAUAUAAACUAUCAAUGAACUUCU-CCGCAGUUCCCUGCUUUAAGGCUUUAUUGAGCAAGGGCCUGGGAUUGGGCAUU
.(((...((...(((((((..............(((((((((((..-..((((....))))....))).))))))))....))))))).))...)))... ( -22.67)
>DroYak_CAF1 103 100 + 1
CGUUAAUUCAAAUGGAUCUCCACCUAUUAACUAUCAAUUAACUUCUUCCGCAGUUCCCUGCUUUAAGGCUUUGCUGAGCAAGGGUCUGGGACUAGCCAUU
.((((((.....(((....)))...))))))...............(((.(((..((((((((...(((...))))))).)))).))))))......... ( -23.60)
>DroAna_CAF1 105 94 + 1
CGGUAAUCCAGAUUGG---GAAAUUAAUAAC---GUAUUAUAUUCAUUCGCAGUUCCCUGUUUCAAGGCUCUGCUGAGCAAGGGCCUUGGCCUGGCCAUC
.((....((((...((---(((..(((((..---.))))).............)))))....((((((((((((...)).)))))))))).))))))... ( -25.16)
>consensus
CGCUAAUUCAAAUGGGUCUGAACCUAUUAACUAUCAAUUAACAUCUCUCGCAGUUCCCUGCUUCAAGGCUUUGCUGAGCAAGGGCCUGGGAUUGGCCAUU
.((((.(((.(((((........)))))......................(((..((.(((((...(((...)))))))).))..)))))).)))).... (-14.99 = -15.33 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:41 2006