Locus 1801

Sequence ID 2L_DroMel_CAF1
Location 4,971,340 – 4,971,435
Length 95
Max. P 0.996067
window2902

overview

Window 2

Location 4,971,340 – 4,971,435
Length 95
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 94.27
Mean single sequence MFE -20.96
Consensus MFE -20.60
Energy contribution -20.20
Covariance contribution -0.40
Combinations/Pair 1.08
Mean z-score -1.67
Structure conservation index 0.98
SVM decision value 2.65
SVM RNA-class probability 0.996067
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4971340 95 + 22407834
U--UCUUUGAAAGAUGAGCGCCAAAAG--CAGUCUUUAAUAGCUGAUGGUGGUAAAUAUUUUGGUAUAUUCCAAAAAUUUGCGACGCGAAAAAAAUCUG
.--........((((...(((......--((((........))))...((.((((((.((((((......)))))))))))).)))))......)))). ( -21.20)
>DroSec_CAF1 2235 97 + 1
U--UCUUUGAAAGAUGAGCGCCAAAAGAACAGUCUUUAAUAGCUGAUGGUGGUAAAUAUUUUGGUAUAUUCCAAAAAUUUGCGACGCGAAAAAAAUCUG
.--........((((...(((........((((........))))...((.((((((.((((((......)))))))))))).)))))......)))). ( -21.50)
>DroSim_CAF1 2282 97 + 1
U--UCUUUGAAAGAUGAGCGCCAAAAGAGCAGUCUUUAAUAGCUGAUGGUGGUAAAUAUUUUGGUAUAUUCCAAAAAUUUGCGACGCGAAAAAAAUCUG
.--........((((...(((........((((........))))...((.((((((.((((((......)))))))))))).)))))......)))). ( -21.20)
>DroEre_CAF1 2270 97 + 1
UUAUCUUUGAAAGAUGAGCGCCAAAUG--CAGUCUUUAAUAACUGAUAGUAGUAAAUAUUUUGGUAUAUUCCAAAAAUUUGCGACGCGAAAAAAAUCUG
((((((.....))))))(((.(.....--((((........))))......((((((.((((((......))))))))))))).)))............ ( -19.50)
>DroYak_CAF1 2277 97 + 1
UUUUCUUUGAAAGAUGAGCGCCAAAAU--CAGUCUUUAAUAACUGAUAGUAGUAAAUAUUUUGGUAUAUUCCGAAAAUUUGCGACGCGAAAAAAAUCUG
...........((((...(((....((--((((........)))))).((.((((((.((((((......)))))))))))).)))))......)))). ( -21.40)
>consensus
U__UCUUUGAAAGAUGAGCGCCAAAAG__CAGUCUUUAAUAGCUGAUGGUGGUAAAUAUUUUGGUAUAUUCCAAAAAUUUGCGACGCGAAAAAAAUCUG
...........((((...(((........((((........))))...((.((((((.((((((......)))))))))))).)))))......)))). (-20.60 = -20.20 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:39 2006