Locus 1800

Sequence ID	2L_DroMel_CAF1
Location	4,970,394 – 4,970,487
Length	93
Max. P	0.810254

overview

Window 1

Location	4,970,394 – 4,970,487
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	94.30
Mean single sequence MFE	-22.70
Consensus MFE	-20.30
Energy contribution	-20.54
Covariance contribution	0.24
Combinations/Pair	1.05
Mean z-score	-1.33
Structure conservation index	0.89
SVM decision value	0.65
SVM RNA-class probability	0.810254
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4970394 93 - 22407834
GAAACAGAUCUCCAGGACCAAGAGGUGGUCUACGAGGAAGAGAUGAUACAGCUCAAGCCGGAAGAUACGGAGAUUAAUAACGAAUACCAAGUC
......(((((((.((((((.....))))))....((..(((.((...)).)))...)).........))))))).................. ( -21.60)
>DroSec_CAF1 1273 93 - 1
GAAACAGAUCUCCAGGACCAAGAGGUGGUCUACGAGGAAGAGAUGAUGCAGCUCAAGCCGGAAGAUCCGGAGAUUAAUAACGAAUUUCAAGUC
......(((((((.((((((.....))))))....(((.(((.((...)).)))....(....).)))))))))).................. ( -24.10)
>DroSim_CAF1 1310 93 - 1
GAAACAGAUCUCCAGGACCAAGAGGUGGUCUACGAGGAAGAGAUGAUGCAGCUCAAGCCGGAAGAUCCGGAGAUUAAUAACGAAUUUCAAGUC
......(((((((.((((((.....))))))....(((.(((.((...)).)))....(....).)))))))))).................. ( -24.10)
>DroEre_CAF1 1304 93 - 1
GAAACAGAUCUCCAGGACCAAGAGGUGGUCUACGAGGAAGAGAUGAUACAUCUGAAAACGGACGAUCCGGAGAUUAAUAACGAAUUCCAAGUC
......(((((((.((((((.....))))))....(((..(((((...))))).....(....).)))))))))).................. ( -22.00)
>DroYak_CAF1 1305 93 - 1
GAAACAGAUCUCCAGGACCAAGAGGUGGUCUACGAGGAAGAGAUGAUACACCUCAAGCCAGACGAUCCGGAGGUUAAUAACGAAUUCCAAGUC
......(((((((.(((.(..((((((((((.(......)))))....))))))..(.....)).)))))))))).................. ( -21.70)
>consensus
GAAACAGAUCUCCAGGACCAAGAGGUGGUCUACGAGGAAGAGAUGAUACAGCUCAAGCCGGAAGAUCCGGAGAUUAAUAACGAAUUCCAAGUC
......(((((((.((((((.....))))))....(((.(((.((...)).)))....(....).)))))))))).................. (-20.30 = -20.54 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:38 2006