Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 560,856 – 560,952 |
Length | 96 |
Max. P | 0.870769 |
Location | 560,856 – 560,952 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -34.75 |
Consensus MFE | -24.91 |
Energy contribution | -24.85 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.19 |
Mean z-score | -2.02 |
Structure conservation index | 0.72 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 560856 96 - 22407834 CCUCCAAAGCAAACUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACAGCCUCCCCGAAAUCGGCUGCAUCCCCAAAA ..((((........)))).....(((((((((((.((..((((.(((....(((.....)))....)))...))))..)).))))).))))))... ( -40.20) >DroSec_CAF1 1155 96 - 1 CCUCCAAAGCAAGCUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACACCCUCCCCGAAAUCGGUUGCAUCCCCAAAA ..((((........)))).....(((((((((((.((..((((.(((....)))..((.((.....)).)).))))..)).))))).))))))... ( -34.10) >DroSim_CAF1 1155 96 - 1 CCUCCAAAGCAAGCUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACACCCUCCCCGAAAUCGGUUGCAUCCCCAAAA ..((((........)))).....(((((((((((.((..((((.(((....)))..((.((.....)).)).))))..)).))))).))))))... ( -34.10) >DroAna_CAF1 2203 96 - 1 GCAGCAAAGCAGGCUGCGCCAGCUGGUGGGCAGCAGAAGCCAGUGACACCUCCUUCGAAGACAUCGCUCUCGCCGAAAGCGCCAGCCUCUCCAAAA ((......))(((((((((....(((((((.(((.((((..((......)).))))((.....))))))))))))...))).))))))........ ( -30.60) >consensus CCUCCAAAGCAAGCUGGACCAACUGGGGGGCAGCAGAAGUCGGCGGCGAACGCCUCGAAGGCCACACCCUCCCCGAAAUCGGCUGCAUCCCCAAAA ..((((........)))).....(((((((((((.((....((((.....))))(((.(((......)))...)))..)).))))).))))))... (-24.91 = -24.85 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:11 2006