| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,963,166 – 4,963,286 |
| Length | 120 |
| Max. P | 0.633866 |
| Location | 4,963,166 – 4,963,286 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.06 |
| Mean single sequence MFE | -46.74 |
| Consensus MFE | -21.99 |
| Energy contribution | -20.55 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4963166 120 + 22407834 CUCUAGGGGGGAUGACGAGAGUUCCUCUUCCUCCUCCUCAUCGUCUUCCUCCAGCGAGGACGAGCAGGCCGACAACAAGAGUUUGGACUCACUGGACAUGACCACCAUCAGGCUGGACGA .....(((((((.((.(((.....))).)).)))))))..((((((.(((((((.(((..(((((...............)))))..))).)))))..(((......)))))..)))))) ( -42.16) >DroVir_CAF1 23548 120 + 1 UGUCCGCGGCGAUGACGAGGAAUCCUCAUCGUCCUCCUCCUCGUCAUCGUCCAGCGAGGACGAGGGCGCCGAUGCCCAGAGCGUCGACUCCCUCGACAUGACAACCAUACGCCUGGACGA .(((((.((((((((((((((................)))))))))))((((.....))))(((((.(.((((((.....)))))).).)))))................)))))))).. ( -56.19) >DroPse_CAF1 11418 120 + 1 GAUAAGAGGCGACGACGAGUCAUCCUCGUCUUCCUCCGAGUCGUCUUCCUCCAGCGAGGACGAAGAGGCCGACACGAAGAGUCUUGACUCGCUGGACAUGACCACCAUUCGGCUGGAUGA .....((((((((((((((.....)))))).((....))))))))))..(((((((((......((((((........).)))))..))))))))).....(((((....)).))).... ( -43.80) >DroGri_CAF1 100297 120 + 1 UGUCCAUGGCGACGACGAGUCCUCGUCUUCGUCGUCGUCCUCCUCGUCGUCCAGUGAGGAUGAGGCUGCCGAUGCCCAGAGCAUUGACUCGCUGGACAUGACCACCAUCCGGCUGGAUGA ((((((.((((((((((((........))))))))))))..(((((((.((....)).)))))))....((((((.....))))))......)))))).......(((((....))))). ( -50.30) >DroAna_CAF1 11662 120 + 1 GGCGAAGGGCGAUGACGAGGAGUCGUCGUCCUCGUCGGAAUCCUCCUCCUCUAGCGAAGAUCAACAGGCGGACAACAAGAGUUUGGACUCCCUGGAUAUGACCACAAUUCGACUGGACGA (((((.((((((((((.....)))))))))))))))(((....)))((.(((((((((..(((.((((.(..(((.......)))..)..))))....)))......)))).))))).)) ( -43.30) >DroPer_CAF1 11135 120 + 1 GAUAAGAGGCGACGACGAGUCAUCCUCGUCUUCCUCCGAGUCGUCAUCCUCCAGCGAGGACGAAGAGGCCGACACGAAGAGUCUUGACUCGCUGGACAUGACCACCAUUCGGCUGGAUGA .....((((.(((.....)))..)))).((.(((.((((((.(((((..(((((((((......((((((........).)))))..))))))))).)))))....))))))..))).)) ( -44.70) >consensus GGUAAGAGGCGACGACGAGUCAUCCUCGUCCUCCUCCGAAUCGUCAUCCUCCAGCGAGGACGAAGAGGCCGACACCAAGAGUCUUGACUCGCUGGACAUGACCACCAUUCGGCUGGACGA .....(((((((.((.......)).)))))))..............((.(((((((((......((((((........).)))))..)))..(((......))).......)))))).)) (-21.99 = -20.55 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:37 2006