| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,956,243 – 4,956,357 |
| Length | 114 |
| Max. P | 0.615641 |
| Location | 4,956,243 – 4,956,357 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.01 |
| Mean single sequence MFE | -38.97 |
| Consensus MFE | -20.69 |
| Energy contribution | -20.37 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4956243 114 - 22407834 A----UGCUUACCAUACCCCAUCCUGUUGGAAGGGCAUUAGCUGGUCCGCCAGCUUCGGUUCUAUGGAAGCUAAAACACUUCUUUCCGGAACUACUGGCGGCUGGCCGCAGAGAUCCA .----(((.........(((.(((....))).))).....((..(.(((((((....((((((..(((((........)))))....)))))).))))))))..)).)))........ ( -41.10) >DroEre_CAF1 4549 114 - 1 A----AGCUUACCAUACGCCAUCCUGUUGGAAGGGCAUAAGCUGGUCCGCGAGCUUGGGUUCUAUGGAAGCUAAAACACUUCUUUCCGGAACUAUAGGAGGCUGGCGGCAGAGAUCCA .----((((((......(((.(((....)))..))).)))))).(.((((.(((((.((((((..(((((........)))))....)))))).....))))).)))))......... ( -35.60) >DroYak_CAF1 3841 114 - 1 A----AUCUUACCAAACCCCAUCCUGUUGGAAGGGCAUUAGCUGGUCCGCCAGCUUGGGUUCUAUGGAGGCUAAAACACUUCUUUCCGGAACUAUUGGCGGCUGGCGGCAGAGAUCCA .----(((((.((....(((.(((....))).))).....((..(.(((((((....((((((..(((((........)))))....)))))).))))))))..))))..)))))... ( -42.20) >DroMoj_CAF1 16492 118 - 1 AAGCUUUCUUACCACACGCCCUCCUCCUGGAAGGGCAUCAGCUUCUCGGCCAGCUUUGGCUCAAUGGAGGCCAAGACACUCCUCUCCAAGGGCUUCGCCGGCUGCUUGCAGAGAUCAA ..(.(((((........(((((((....)).)))))....((....(((((.((...(((((..((((((............)))))).)))))..)).)))))...))))))).).. ( -39.90) >DroAna_CAF1 4697 109 - 1 ---------UACCAUACUCCAUCCUGCUGAAAGGGCAUAAGCUUGUCUGCCAGCUUAGGUUCUAUGGAGGCCAAUACACUCUUGUCCAGGGCCAUGGGCGGUUUCUGGCAGAGAUCAA ---------..((((..((((((((((((...(((((......)))))..))))..)))....)))))((((...(((....)))....))))))))..((((((.....)))))).. ( -34.90) >DroPer_CAF1 4231 114 - 1 A----CACUAACCAUACUCCGUCCUGUUGAAAGGGCAUCAAUCUGUCCGCCAGCUUGGGUUCGAUGGAUGCUAGCACGCUACGCUCCAGAGUCUUAGGUGGCUGCCGACAGAGGUCAA .----.....(((.......(((((......))))).....((((((.((((.((.((..((..((((.(((((....))).))))))))..)).)).))))....)))))))))... ( -40.10) >consensus A____AGCUUACCAUACCCCAUCCUGUUGGAAGGGCAUAAGCUGGUCCGCCAGCUUGGGUUCUAUGGAGGCUAAAACACUUCUUUCCAGAACCAUAGGCGGCUGCCGGCAGAGAUCAA .....................((((((((...((((........))))(((.(((..(((((..((((((............)))))))))))...))))))...)))))).)).... (-20.69 = -20.37 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:36 2006