Locus 1794

Sequence ID 2L_DroMel_CAF1
Location 4,948,369 – 4,948,466
Length 97
Max. P 0.506594
window2890

overview

Window 0

Location 4,948,369 – 4,948,466
Length 97
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 76.42
Mean single sequence MFE -28.20
Consensus MFE -16.68
Energy contribution -18.13
Covariance contribution 1.45
Combinations/Pair 1.33
Mean z-score -1.38
Structure conservation index 0.59
SVM decision value -0.05
SVM RNA-class probability 0.506594
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4948369 97 - 22407834
GGUCCACAUCGAUCGGCCCGGCAUGGGCUACA---UGCCAACUGUGCAACAUCACCGCCUGUUCCUGCAGGUUUGAGAUUAAUU-CUGAUUCCGGGCCAAU
((((......))))((((((((((.(((....---.)))....))))....(((..((((((....)))))).)))........-.......))))))... ( -35.10)
>DroVir_CAF1 3595 87 - 1
CAUGCACAUCGAUCGGCCGAGCAUGGGCUACAAUCUGCCCGCACUGC---AGCAUCGCUUGUACCUGCAGGUAUGAAAC----AACUGAAU-------AAC
(((((...(((......)))((..((((........)))))).((((---((((.....))...)))))))))))....----........-------... ( -22.90)
>DroSec_CAF1 3926 95 - 1
UGUCCACAUCGAUCGGCCCGGCAUGGGCUACA---UGCCAACUGUGCAACAUCACCGCCUGUUCCUGCAGGUUUGAGAUUAAUU-CUGAUUCCGGGUCA--
..............((((((((((.(((....---.)))....))))....(((..((((((....)))))).)))........-.......)))))).-- ( -29.90)
>DroEre_CAF1 4110 97 - 1
GGUCCACAUCGAUCGGCCCAGUAUGGGCUACA---UGCCAACUGUGCGACAUCACCGCCUGUUCCUUCAGGUUUGAGAUUAAUU-CUGAUUCCGGGCCAAU
((((......))))(((((.((((.(((....---.)))....))))((.(((...(((((......)))))...(((.....)-))))))).)))))... ( -30.00)
>DroYak_CAF1 3943 97 - 1
UGUACACAUCGAUCGGCCCGGCAUGGGCUACA---UGCCAACAGUGCGACAUCACCGUCUGUUCCUGCAGGUUUGAGAUUAAUU-UUGAUUCGGGGUCAAU
..............(((((((((((.....))---))))(((((.(((.......))))))))......(..(..(((....))-)..)..).)))))... ( -26.80)
>DroMoj_CAF1 3949 94 - 1
UCUGCACAUUGAUCGGCCGAUCAUGGGCUACAAUCUGCCCGCUAUAC---AGCAUCGCCUGUACCUGCAGGUCUGAGAUUACCUACUAAAUA----AUAAU
(((((....(((((....))))).((((........))))))....(---((....((((((....))))))))))))..............----..... ( -24.50)
>consensus
UGUCCACAUCGAUCGGCCCAGCAUGGGCUACA___UGCCAACUGUGC_ACAUCACCGCCUGUUCCUGCAGGUUUGAGAUUAAUU_CUGAUUCCGGGCCAAU
..............(((((.((((.(((........)))....)))).........((((((....)))))).....................)))))... (-16.68 = -18.13 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:27 2006