Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,945,199 – 4,945,299 |
Length | 100 |
Max. P | 0.500000 |
Location | 4,945,199 – 4,945,299 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 84.70 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -18.42 |
Energy contribution | -18.78 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.24 |
Mean z-score | -1.69 |
Structure conservation index | 0.76 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4945199 100 + 22407834 UGCUGCGCUCGAUGUAUUCCUUGGGCAGAUUGGAAAAGUUCUUCAACUUGCUGGCCAAAUAUUGCGUUAAACGCAUUUUGAAAGGUUAAUUCAAUUA--UUA ...((((.(..(((((....((((.(((.(((((.......)))))....))).))))....)))))..).))))..(((((.......)))))...--... ( -21.90) >DroPse_CAF1 758 100 + 1 UGCUGCGCUCAAUGUACUCCUUGGGCAGAUUGGAGAAGUUCUUCAAUUUGCUGGCCAAAAACUGUGUUAUGCGCAUUUUGUAAUA--AUUUAAACAAAUUUA ...(((((..((..((....(((((((((((((((.....)))))))))))...))))....))..))..))))).(((((....--......))))).... ( -27.00) >DroWil_CAF1 699 100 + 1 UGCUGCGCUCAAUGUAUUCCUUGGGCAGAUUGGAGAAAUUCUUCAAUUUGCUGGUCAAAAAUUGAGUUAAACGCAUUUUUAAUUAAUAAAUUAACAA--UUA ...((((((((((.....((...((((((((((((.....))))))))))))))......)))))).....))))...((((((....))))))...--... ( -25.50) >DroYak_CAF1 723 100 + 1 UGCUGCGCUCAAUGUAUUCCUUGGGCAGAUUGGAAAAGUUCUUCAACUUGCUGGCCAAAUAUUGCGUUAAACGCAUCUUGAAGGAUUAAUUCAACAA--UUA ......((((((.(....).))))))...(((((..((((((((((..(((((((((.....)).))))...)))..))))))))))..)))))...--... ( -24.00) >DroAna_CAF1 737 100 + 1 UGCUGCGCUCAAUGUACUCCUUGGGAAGAUUGGAGAAGUUCUUCAGUUUGCUAGCCAGGUAUUGUGUUAUUCGCAUUUUGUAUAUUUAAUUCAACAA--UUA ((.((.....(((((((..(((((..(((((((((.....))))))))).....)))))...((((.....))))....))))))).....)).)).--... ( -20.00) >DroPer_CAF1 643 100 + 1 UGCUGCGCUCAAUGUACUCCUUGGGCAGAUUGGAGAAGUUCUUCAAUUUGCUGGCCAAAAACUGUGUUAUGCGCAUUUUGUAAUA--AUUUAAACAAAUUUA ...(((((..((..((....(((((((((((((((.....)))))))))))...))))....))..))..))))).(((((....--......))))).... ( -27.00) >consensus UGCUGCGCUCAAUGUACUCCUUGGGCAGAUUGGAGAAGUUCUUCAAUUUGCUGGCCAAAAAUUGUGUUAAACGCAUUUUGAAAUAUUAAUUCAACAA__UUA .(((((((((((.(....).))))))(((((((((.....))))))))))).)))((((...((((.....)))).))))...................... (-18.42 = -18.78 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:26 2006