Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,944,382 – 4,944,475 |
Length | 93 |
Max. P | 0.519019 |
Location | 4,944,382 – 4,944,475 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.32 |
Mean single sequence MFE | -25.25 |
Consensus MFE | -15.09 |
Energy contribution | -15.20 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.45 |
Structure conservation index | 0.60 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4944382 93 - 22407834 ------GGUAUGGGCUAU---UAUCGCAUUUCAAUAUG---UUCCUAGUCAUACAA-----GUCUGUCCUUUUCAGGCGCUGUUGUGGGCGAGAUCACCUUUCAGCCCA-A ------.((((((.(((.---....((((......)))---)...)))))))))..-----(((((.......))))).......(((((((((.....)))).)))))-. ( -24.30) >DroPse_CAF1 1057 98 - 1 -------GUAGGAGCUUC---UAG-GCGUU-AUAUAUAGAACAUCUUCUGCUAUAGUUAUUUUCUGUUUUUUGUAGCGGCUGUUGUGGGUGAGAUUACCUUCCAGCCUA-A -------..(((((.(((---((.-.....-.....)))))...)))))(((((((..(........)..)))))))(((((....(((((....)))))..)))))..-. ( -24.10) >DroSec_CAF1 1038 93 - 1 ------GGUAUGACCUAU---UAUCGCAUUUCAAUAUG---UUUCUUGUACUACAA-----GUCUGUCCCUUUCAGGCGCUGUUGUGGGUGAGAUCACCUUUCAGCCCA-A ------((...(((....---....((((......)))---)...(((.....)))-----)))...))......((.((((....(((((....)))))..)))))).-. ( -21.40) >DroSim_CAF1 1039 100 - 1 ACGCCAGGUAUGGCCUAU---UAUCGCAUUUCAAUAUG---UUUCUUGUACUACAA-----GUCUGUCCAUUUCAGGCGCUGUUGUGGGUGAGAUCACCUUUCAGCCCAGA ..(((.((.((((.(...---....((((......)))---)..((((.....)))-----)...).)))).)).)))((((....(((((....)))))..))))..... ( -25.80) >DroEre_CAF1 1535 96 - 1 ------GGUAUGGGCUACUCAUAUCUCAAAUCAUUAUG---UUCAUAGUCCUACAA-----GUCUGUCCUUUUCAGGCGCUGUUGUGGGUGAGAUCACCUUUCAGCCCA-A ------.(((.((((((..((((...........))))---....)))))))))..-----(((((.......)))))((((....(((((....)))))..))))...-. ( -28.50) >DroYak_CAF1 1030 93 - 1 ------GGUAUGGGCUAU---CAUCGCAUUUAAAUAUG---UUUCUAGUCCUACAA-----GUCUGUCCUUUUCAGGCGCUGUUGUGGGCGAGAUCACCUUUCAGCCCA-A ------....((((((..---....((((......)))---).(((.((((.(((.-----(((((.......)))))..)))...)))).))).........))))))-. ( -27.40) >consensus ______GGUAUGGGCUAU___UAUCGCAUUUCAAUAUG___UUUCUAGUCCUACAA_____GUCUGUCCUUUUCAGGCGCUGUUGUGGGUGAGAUCACCUUUCAGCCCA_A ......((.....................................................(((((.......)))))((((....(((((....)))))..))))))... (-15.09 = -15.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:25 2006