| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 558,580 – 558,684 |
| Length | 104 |
| Max. P | 0.691674 |
| Location | 558,580 – 558,684 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.49 |
| Mean single sequence MFE | -36.25 |
| Consensus MFE | -23.05 |
| Energy contribution | -23.08 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 558580 104 - 22407834 GAGCCGCUCUUCGCAGUGGCCUCUUUUAGUCCCGAAAGAGGCGGUUCAGUGACCAUCUUUGCAGAUACCGUCAGUAUU---------AAUCGCUUUGGUCGCAGACCCUGCCA (((((((.....))....(((((((((......)))))))))))))).(((((((.....((.(((((.....)))))---------....))..)))))))........... ( -35.60) >DroSec_CAF1 4713 104 - 1 GAGCCGCUCUUCGCAGUGGCCUCUUUUAGUCCCGAAAGAGGCGGUUCGGUGACCAUCUUUGCGGAUACCGUGAGUAUA---------AACCUCUUUGGUAUCAGACCCUGCCA (((((((.....))....(((((((((......))))))))))))))(((..(((....)).)(((((((.(((....---------...)))..))))))).......))). ( -35.60) >DroSim_CAF1 4631 104 - 1 GAGCCGCUCUUCGCAGUGGCCUCUUUUAGUCCCGAAAGAGGCGGUUCGGUGACCAUCUUUGCGGAUACCGUGAGUACU---------AACCUCUUUGGUCGCAGACCCUGCCA (((((((.....))....(((((((((......)))))))))))))).(((((((.....((((...))))(((....---------...)))..)))))))........... ( -37.10) >DroEre_CAF1 4652 113 - 1 GAGCCGCUCUUCGCAGUGGCCUCAUUUAGUCCCGAAAGAGGCGGUUCCGUGACCAUUUUUGCGGAUACCGUGAGUACUUCGAGUCGGAGACCUUAUUGUAGCCGACCCUGCCA ..((((((......))))))(((((...(((.(....).)))(((((((..(......)..)))).))))))))......(.(((((..((......))..))))).)..... ( -38.60) >DroWil_CAF1 4655 94 - 1 GAACCGUUAUUUGCUGUGGCCUCGUUUAGUCAAGAACGUGGCGGUUCGGUGACCAUAUUUGCAGAUACGGUAGGAUU-------------CCCAAUUC-----GACC-UAAUC ..(((((.((((((....(((.(((((......))))).)))((((....))))......))))))))))).((...-------------.)).....-----....-..... ( -28.10) >DroYak_CAF1 4640 113 - 1 GAGCCGCUCUUCGCAGUGGCCUCUUUUAGUCCCGAAAGAGGCGGUUCCGUGACCAUUUUUGCGGAUACCGUAAGUACUUUGUGUCGGAGACUCUAUUCCGGCAGACCCUGCCA ((((((((......))))).)))....((((((((.(((((((((((((..(......)..)))).))))).....))))...)))).)))).......(((((...))))). ( -42.50) >consensus GAGCCGCUCUUCGCAGUGGCCUCUUUUAGUCCCGAAAGAGGCGGUUCGGUGACCAUCUUUGCGGAUACCGUGAGUACU_________AAACUCUAUGGUAGCAGACCCUGCCA (((((((.....))....(((((((((......))))))))))))))..........(((((((...)))))))....................................... (-23.05 = -23.08 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:09 2006