Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,885,586 – 4,885,676 |
Length | 90 |
Max. P | 0.683111 |
Location | 4,885,586 – 4,885,676 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 74.69 |
Mean single sequence MFE | -16.65 |
Consensus MFE | -7.79 |
Energy contribution | -8.02 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.29 |
Mean z-score | -1.88 |
Structure conservation index | 0.47 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4885586 90 + 22407834 -AGAUAUGAUGCUUGUAGUCA--AGUAACUUGACUAUAAAAUAUCCCUCGAAAAAAAGAAUAAAUUGUUUUGUUUUUCCACCCAUGGAA--ACCU -.(((((.....(((((((((--((...))))))))))).)))))............(((((((....)))))))(((((....)))))--.... ( -18.80) >DroGri_CAF1 51407 79 + 1 UAAAUAUAAUUCUUGCUGUCGGAAAUGUCUCGU---UCAACCUUAUUUCAA-CAAAAUAAUAAAAU---UUAAU-CCACGCAUAUGU-------- .............(((.((.(((..((......---.))...((((((...-..))))))......---....)-))))))).....-------- ( -4.80) >DroSec_CAF1 35115 88 + 1 -AGUUAUGAUGCUUGUAGUCA--AGCAACUUGACUAUAAAAAAUCCCUAAA-AAAAGGAAUAAAUUGUUCUGUU-UUCCACCCAUGGAA--ACCU -......(((..(((((((((--((...)))))))))))...)))......-....(((((.....)))))..(-(((((....)))))--)... ( -18.90) >DroSim_CAF1 36238 88 + 1 -AGAUAUGAUGCUUGUAGUCA--AGCAACUUGACUAUAAAAGAUCCCUCGA-AAAAAGAAUAAAUUGUUCUGUU-UUCCACCCAUGGAA--UCCU -.(((.(.(((.(((((((((--((...)))))))))))..........((-(((.(((((.....))))).))-)))....))).).)--)).. ( -19.80) >DroEre_CAF1 36741 90 + 1 -AGAUAUGAUUCUUGUAGUCA--AGCAACUUGACUAUAAAAGAUCCCUCGA-AAAAAGAAUAAAUUGUUUUGUU-UUCCGCCUAUGGAAAAACAA -.((...((((.(((((((((--((...)))))))))))..))))..))..-.................(((((-(((((....))).))))))) ( -18.40) >DroYak_CAF1 36686 87 + 1 -AGAUAUGAAGCUUGUAGUCA--AGCAACUUGACUAUAAAAGAUCCCUCGA-AAAA---AUAAAUUGUUUUGUU-UUCCGCCUACGGAAAAACCA -......((((((((((((((--((...)))))))))))..((....))..-....---.......))))).((-(((((....))))))).... ( -19.20) >consensus _AGAUAUGAUGCUUGUAGUCA__AGCAACUUGACUAUAAAAGAUCCCUCGA_AAAAAGAAUAAAUUGUUUUGUU_UUCCACCCAUGGAA__ACCU ............(((((((((.........)))))))))....................................(((((....)))))...... ( -7.79 = -8.02 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:18 2006