Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,883,395 – 4,883,494 |
Length | 99 |
Max. P | 0.561456 |
Location | 4,883,395 – 4,883,494 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.71 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -12.02 |
Energy contribution | -13.05 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.25 |
Mean z-score | -2.12 |
Structure conservation index | 0.47 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4883395 99 + 22407834 ACAAGGGUUGCAAUUGGCUUCCCCUUAUAUUGGUCAUCUAUAGUGCCAAAACUGUCACUUGUCCUCCACCGCGGACAUAUCAGAGUCCACCUGCAACCC ....((((((((..(((((..........((((.(((.....)))))))..(((.....(((((........)))))...))))).)))..)))))))) ( -31.30) >DroSec_CAF1 32925 98 + 1 ACAAGGG-UGCAAUUGGCUCCCCAUUAUAUUGGGCAUCUGUAGUGCCACAACUUUCACUUGUCCUCCACCGCGGACACAUCAAAGUCCACCUGCAACCC ....(((-((((..(((.............(((((((.....))))).))(((((....(((((........)))))....))))))))..))).)))) ( -26.80) >DroSim_CAF1 34047 98 + 1 ACAAGGG-UGCAAUUGGCUCCCCAUUAUAUUGGGCAUCUGUAGUGCCACAACUUUCACUUGUCCUCCACCGCGGACACAUCAAAGUCCACCUGCAACCC ....(((-((((..(((.............(((((((.....))))).))(((((....(((((........)))))....))))))))..))).)))) ( -26.80) >DroEre_CAF1 34551 98 + 1 ACAAGGG-UGCAAUUGGCUCCCCGUUAUAUUGGGAAUCUAUAGUGCCACAAAUCUCACUUGUCAUCAACCGCGGACACAUCGAAGUCCACCUGCAAUCC ....(((-((((..((((.(((((......))))........).))))........................((((........))))...))).)))) ( -20.10) >DroYak_CAF1 34499 98 + 1 ACAAGGG-UGCAAUUGCCUUCCCGUUAAAUUGGGCAUCAACAGUGCCAAAAAUUUCACUUGUCCUCUACCGCGGACACAUCGAAGUCCACCUGCAAUCC ....(((-((((..((.((((..((.(((((.(((((.....)))))...))))).)).(((((........)))))....))))..))..))).)))) ( -25.40) >DroAna_CAF1 38601 97 + 1 AAACAGC-UACAGUUCCUUCAGAAGGCUACUGCGCAGUUCCUGCGCUAUAAAUUGCAAUUGUGAGCCAUCGCGGAGGCUUCAACAU-CGCCUGAAAUCC ...(((.-....((((((((.((.(((....((((((...))))))......(..(....)..)))).))..)))))....)))..-...)))...... ( -24.30) >consensus ACAAGGG_UGCAAUUGGCUCCCCAUUAUAUUGGGCAUCUAUAGUGCCACAAAUUUCACUUGUCCUCCACCGCGGACACAUCAAAGUCCACCUGCAACCC ....(((.((((..((((.(((((......))))........).))))........................((((........))))...)))).))) (-12.02 = -13.05 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:17 2006