Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,880,787 – 4,880,877 |
Length | 90 |
Max. P | 0.998826 |
Location | 4,880,787 – 4,880,877 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 72.81 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -12.26 |
Energy contribution | -12.93 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.43 |
Mean z-score | -2.28 |
Structure conservation index | 0.38 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.920562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4880787 90 + 22407834 UAUUGGGGUUAGUUCGGCGAUCACGCCGCCCCAGUCGCAAAGGAAGACCCACAAAAAAC----UACGUGGGUAUCCCCCCCUUUGAGCUAGAGC .(((((((......(((((....))))))))))))..((((((...((((((.......----...)))))).......))))))......... ( -31.00) >DroSec_CAF1 30325 77 + 1 UAUUGGGGUUAACUCGGCGAUCACGCCGCCCCAGACGCAAAGGGAGUCCC-------------UUUGAGGGAGUC----CCUUUGAGCUGGAGC ....(((.....)))((((....))))((.((((...((((((((.((((-------------.....)))).))----))))))..)))).)) ( -40.00) >DroSim_CAF1 31463 77 + 1 UAUUGGGGUUAGCUCGGCGAUCACGCCGCCCCAGACGCAGAGGGAGUCCC-------------UUUGAGGGUGUC----CCUUUGAGCUGGAGC .....(((....)))((((....))))((.((((...((((((((..(((-------------.....)))..))----))))))..)))).)) ( -35.70) >DroEre_CAF1 31945 83 + 1 UAUUGGGGUUAGCUCGGCGAUCACGCAGCCCCAAACGCAAAGGGAGCCCCACA-AACAG----AACGU--GGUUC----CCUUUGAGCUGGAGC ..((((((((.((...........))))))))))...(((((((((((.(...-.....----...).--)))))----))))))......... ( -30.20) >DroYak_CAF1 31899 84 + 1 UAUUGGGGUUAGCUCGGCGAUCACGCCGCACCAGAAGCAAAGGGAGUCCCACAAAACAG----AACGU--GUUUC----CCUUUGAGCUGGAGC .....(((....)))((((....))))((.((((...(((((((((...(((.......----...))--).)))----))))))..)))).)) ( -31.40) >DroAna_CAF1 35807 88 + 1 UAUUAGGGUUAGCUGGGCGAUCUUGCGGUAACGCGCUCAUUCAGAGUCCCACACAUGACUAAUAGUGU--GGUUC----CGUACGAGCUGAAGC ........((((((.((((.....(((....)))((((.....)))).((((((((.....)).))))--))...----))).).))))))... ( -25.50) >consensus UAUUGGGGUUAGCUCGGCGAUCACGCCGCCCCAGACGCAAAGGGAGUCCCACA_AA_A_____AACGU__GUUUC____CCUUUGAGCUGGAGC .....(((....)))((((....))))((.((((...((((((((.((......................)).))....))))))..)))).)) (-12.26 = -12.93 + 0.67)
Location | 4,880,787 – 4,880,877 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 72.81 |
Mean single sequence MFE | -34.63 |
Consensus MFE | -14.29 |
Energy contribution | -15.27 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.33 |
Mean z-score | -3.32 |
Structure conservation index | 0.41 |
SVM decision value | 3.24 |
SVM RNA-class probability | 0.998826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4880787 90 - 22407834 GCUCUAGCUCAAAGGGGGGGAUACCCACGUA----GUUUUUUGUGGGUCUUCCUUUGCGACUGGGGCGGCGUGAUCGCCGAACUAACCCCAAUA ((((((((.(((((((((....(((((((..----......)))))))))))))))).).)))))))((((....))))............... ( -39.80) >DroSec_CAF1 30325 77 - 1 GCUCCAGCUCAAAGG----GACUCCCUCAAA-------------GGGACUCCCUUUGCGUCUGGGGCGGCGUGAUCGCCGAGUUAACCCCAAUA ((((((((.((((((----((.((((.....-------------)))).)))))))).).)))))))((((....))))............... ( -41.20) >DroSim_CAF1 31463 77 - 1 GCUCCAGCUCAAAGG----GACACCCUCAAA-------------GGGACUCCCUCUGCGUCUGGGGCGGCGUGAUCGCCGAGCUAACCCCAAUA ((((((((.((.(((----((..(((.....-------------)))..))))).)).).)))))))((((....))))............... ( -34.60) >DroEre_CAF1 31945 83 - 1 GCUCCAGCUCAAAGG----GAACC--ACGUU----CUGUU-UGUGGGGCUCCCUUUGCGUUUGGGGCUGCGUGAUCGCCGAGCUAACCCCAAUA ((((((((.((((((----((.((--(((..----.....-)))))...)))))))).).))))))).(((....)))................ ( -32.30) >DroYak_CAF1 31899 84 - 1 GCUCCAGCUCAAAGG----GAAAC--ACGUU----CUGUUUUGUGGGACUCCCUUUGCUUCUGGUGCGGCGUGAUCGCCGAGCUAACCCCAAUA ((.((((..((((((----((..(--(((..----......))))....))))))))...)))).))((((....))))............... ( -31.20) >DroAna_CAF1 35807 88 - 1 GCUUCAGCUCGUACG----GAACC--ACACUAUUAGUCAUGUGUGGGACUCUGAAUGAGCGCGUUACCGCAAGAUCGCCCAGCUAACCCUAAUA (((...((((((.((----((.((--((((..........))))))...)))).))))))(((....(....)..)))..)))........... ( -28.70) >consensus GCUCCAGCUCAAAGG____GAAAC__ACAUA_____U_UU_UGUGGGACUCCCUUUGCGUCUGGGGCGGCGUGAUCGCCGAGCUAACCCCAAUA ((((((((.((((((....................................)))))).).)))))))((((....))))............... (-14.29 = -15.27 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:17 2006