Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,879,508 – 4,879,604 |
Length | 96 |
Max. P | 0.999912 |
Location | 4,879,508 – 4,879,604 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 89.27 |
Mean single sequence MFE | -26.95 |
Consensus MFE | -23.68 |
Energy contribution | -23.28 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.10 |
Mean z-score | -3.69 |
Structure conservation index | 0.88 |
SVM decision value | 4.51 |
SVM RNA-class probability | 0.999912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4879508 96 + 22407834 AUUAUCAUAUUGCU--UGGCUACCCUCACAGAAAGCUUUUGCUGAAAAAUAGUUGAUGAUCUUUUCAUAUUUUCUCGUUCUGUGAGGGUAUGUAAACU ..............--..((((((((((((((((((....)))((((((((..(((........))))))))).)).))))))))))))).))..... ( -28.60) >DroSec_CAF1 29179 94 + 1 AUUAUCAUAUUGCU--UGGCUGCCCUCACAGAAAGCU--UGCUCAAAAAUAGUUGGUGAUCAUUUCAUAUUUUCUCGUUCUGUGAGGGUAUGUAAACU ..............--..(((((((((((((((((((--...........)))).((((.....)))).........))))))))))))).))..... ( -25.60) >DroSim_CAF1 30216 96 + 1 AUUAUCAUAUUGCUUUUGGCUGCCCUCACAGAAAGCU--UGCUCAAAAAUAGUUGGUGAUCAUUUCAUAUUUUCUCGUUCUGUGAGGGUAUGUAAACU ..................(((((((((((((((((((--...........)))).((((.....)))).........))))))))))))).))..... ( -25.60) >DroEre_CAF1 30687 89 + 1 AUUAUCAUUUUGCU--UUGCUACCCUCACAGAAAGCU--UGCUCAUAAAUAGUUG-UGAUUU----UGAUUUUCUCGUUCUGUGAGGGUAUGUAAACU .............(--(((((((((((((((((....--...((((((....)))-)))...----.((.....)).))))))))))))).))))).. ( -27.50) >DroYak_CAF1 30632 89 + 1 AUUAUCAUUUUGCU--UUGCUACCCUCACAGAAAGCU--UGCUCAAAAAUAGUUG-UGGUUU----UGAUUUUCUCGUUCUGUGAGGGUAUGUAAACU .............(--(((((((((((((((((....--...((((((.((....-)).)))----)))........))))))))))))).))))).. ( -27.46) >consensus AUUAUCAUAUUGCU__UGGCUACCCUCACAGAAAGCU__UGCUCAAAAAUAGUUG_UGAUCUUUUCAUAUUUUCUCGUUCUGUGAGGGUAUGUAAACU ..................((((((((((((((((((....)))..............((.............))...))))))))))))).))..... (-23.68 = -23.28 + -0.40)
Location | 4,879,508 – 4,879,604 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.27 |
Mean single sequence MFE | -25.66 |
Consensus MFE | -21.91 |
Energy contribution | -22.71 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -4.29 |
Structure conservation index | 0.85 |
SVM decision value | 4.18 |
SVM RNA-class probability | 0.999828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4879508 96 - 22407834 AGUUUACAUACCCUCACAGAACGAGAAAAUAUGAAAAGAUCAUCAACUAUUUUUCAGCAAAAGCUUUCUGUGAGGGUAGCCA--AGCAAUAUGAUAAU .((((...(((((((((((((.((((((...(((........)))....))))))(((....))))))))))))))))...)--)))........... ( -30.10) >DroSec_CAF1 29179 94 - 1 AGUUUACAUACCCUCACAGAACGAGAAAAUAUGAAAUGAUCACCAACUAUUUUUGAGCA--AGCUUUCUGUGAGGGCAGCCA--AGCAAUAUGAUAAU .((((.....((((((((((....((((((((((.....))).....)))))))(((..--..))))))))))))).....)--)))........... ( -21.70) >DroSim_CAF1 30216 96 - 1 AGUUUACAUACCCUCACAGAACGAGAAAAUAUGAAAUGAUCACCAACUAUUUUUGAGCA--AGCUUUCUGUGAGGGCAGCCAAAAGCAAUAUGAUAAU ......((((((((((((((....((((((((((.....))).....)))))))(((..--..)))))))))))))..((.....))..))))..... ( -22.40) >DroEre_CAF1 30687 89 - 1 AGUUUACAUACCCUCACAGAACGAGAAAAUCA----AAAUCA-CAACUAUUUAUGAGCA--AGCUUUCUGUGAGGGUAGCAA--AGCAAAAUGAUAAU .((((...(((((((((((((.(......(((----((((..-.....)))).)))...--..).)))))))))))))...)--)))........... ( -25.90) >DroYak_CAF1 30632 89 - 1 AGUUUACAUACCCUCACAGAACGAGAAAAUCA----AAACCA-CAACUAUUUUUGAGCA--AGCUUUCUGUGAGGGUAGCAA--AGCAAAAUGAUAAU .((((...(((((((((((((.(......(((----(((...-.......))))))...--..).)))))))))))))...)--)))........... ( -28.20) >consensus AGUUUACAUACCCUCACAGAACGAGAAAAUAUGAAAAGAUCA_CAACUAUUUUUGAGCA__AGCUUUCUGUGAGGGUAGCCA__AGCAAUAUGAUAAU .(((....(((((((((((((((((((......................))))))(((....))))))))))))))))......)))........... (-21.91 = -22.71 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:13 2006