Locus 1780

Sequence ID 2L_DroMel_CAF1
Location 4,863,708 – 4,863,803
Length 95
Max. P 0.500000
window2863

overview

Window 3

Location 4,863,708 – 4,863,803
Length 95
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 84.40
Mean single sequence MFE -24.92
Consensus MFE -18.59
Energy contribution -18.37
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.68
Structure conservation index 0.75
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4863708 95 + 22407834
---CUUGG--GCUGCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUAUUCCCGACUUUCACCUUCGCCUACACCCCC
---.((((--(..(.((((((.((((((...((.((.......)).))....)))).)).)))))).)....)))))....................... ( -22.10)
>DroPse_CAF1 18375 93 + 1
UCCGCCGGCUGCUCCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUGUCUCCGACUGUG-CC-UGGCCUCCA-----
...((((((......((((((.((((((...((.((.......)).))....)))).)).))))))((.(((...))).)))-))-.))).....----- ( -27.40)
>DroSec_CAF1 13719 92 + 1
---CUUGG---CUGCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUAUUCCCGACUUUCACCUUCGCCGCCAAAC--
---.((((---(.((((((((.((((((...((.((.......)).))....)))).)).)))))).........(.....)......)).)))))..-- ( -25.00)
>DroEre_CAF1 14665 92 + 1
---UUUGG---CUGCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUAUUCCCGACUUUCACCUUCGCCGCGGCCC--
---...((---((((((((((.((((((...((.((.......)).))....)))).)).))))))........(((.........)))..)))))).-- ( -27.10)
>DroYak_CAF1 14495 92 + 1
---UUUGG---CUGCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUAUUCCCGACUUUCACCUUCGCCCCAGGCC--
---...((---((..((((((.((((((...((.((.......)).))....)))).)).))))))........(((.........))).....))))-- ( -20.50)
>DroPer_CAF1 18154 93 + 1
UCCGCCGGCUGCUCCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUGUCUCCGACUGUG-CC-UGGCCCCCA-----
...((((((......((((((.((((((...((.((.......)).))....)))).)).))))))((.(((...))).)))-))-.))).....----- ( -27.40)
>consensus
___CUUGG___CUGCUGGCAUCUGGCCAAAUCACGUAAUCACAACUUGUUUAUGGCGCAUGUGCCAACUAUUCCCGACUUUCACCUUCGCCCCCA_CC__
.....(((.......((((((.((((((...((.((.......)).))....)))).)).)))))).......)))........................ (-18.59 = -18.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:02 2006