Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 555,953 – 556,073 |
Length | 120 |
Max. P | 0.584346 |
Location | 555,953 – 556,073 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.67 |
Mean single sequence MFE | -45.54 |
Consensus MFE | -26.80 |
Energy contribution | -27.75 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.22 |
Mean z-score | -2.32 |
Structure conservation index | 0.59 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 555953 120 + 22407834 UUCAAUCGCUUGGCGUAAGGCACGAACGGAGCGGGCCUGUUCCAAGUGGCCCAUGCACACCUUGGCCACGUCCAAGCGAUUCGUGUGCACGCACAUCUUAGCCAGAUUUGUCCAGAUCAC ...(((((((((((((..(((.(((...(.(((((((..........)))))..)).)...))))))))).)))))))))).(((((....)))))........(((((....))))).. ( -43.10) >DroVir_CAF1 5830 120 + 1 CUCGAUGGCCUGGCGAAGAGCGCGCACUGAGCGUGCCUGUUCCAAGUGGCCAAGGCACACCUUGGCCACGUCCAGGCGGUUGGUGUGCACGCACAUCUUGGCCAGAUUCGUCCAUAUCAC ...(((((.(((((.(((((((.(((((.(((.((((((..(...((((((((((....)))))))))))..))))))))).).)))).)))...)))).)))))..)))))........ ( -60.40) >DroGri_CAF1 2289 120 + 1 UUCCAUUGCCUGCCGCAGGGCACGCACCGAUCGCGCCUGCUCCAAGUGACCCAUGCACACCUUGGCCACAUCCAGGCGACUCGUGUGCACGCACAUCUUGGCCAGAUUCGUCCAAAUCAC ......(((.((((....)))).)))..(((.(((.(((..(((((.......(((((((..(.(((.......))).)...))))))).......))))).)))...)))....))).. ( -34.34) >DroWil_CAF1 1971 120 + 1 UUCCAUAGCCUGGCGCAGGGCGCGCACUGAACGUGCCUGUUCCAGAUGACCCAGACAAACCUUUGCCACAUCCAAACGUUGGGUGUGGACACACAUCCGUGCUAGGUUAGUCCAAAUCAC .....(((((((((((.(((((((.......)))))))......((((...((((......))))(((((((((.....))))))))).....)))).)))))))))))........... ( -46.10) >DroMoj_CAF1 2010 120 + 1 CUCCAUGGCCUGGCGCAAGGCUCGCACAGACCGGGCCUGCUCCAAGUGGCCCAUGCACACCUUGGCCACAUCCAGGCGAUUUGUGUGCACGCACAUCUUAGCCAGAUUAGUCCAGAUGAC ......(((((((.(((.((((((.......))))))))).)))...))))..(((((((..(.(((.......))).)...)))))))....(((((..((.......))..))))).. ( -43.80) >DroAna_CAF1 1953 120 + 1 UUCCAUGGCCUGGCGCAGGGCACGUACCGACCGUGCCUGUUCCAGGUGGCCCAUGCACACCUUGGCCACGUCCAGCCGAUUAGUGUGCACACACAUCUUGGCCAAGUUCGUCCAAAUCAC .....((((((((.(((((.((((.......))))))))).)))))(((((..(((((((.(((((........)))))...)))))))..........))))).......)))...... ( -45.50) >consensus UUCCAUGGCCUGGCGCAGGGCACGCACCGACCGUGCCUGUUCCAAGUGGCCCAUGCACACCUUGGCCACAUCCAGGCGAUUCGUGUGCACGCACAUCUUGGCCAGAUUCGUCCAAAUCAC .......((((((....(((((((.......))))))).......((((((............))))))..)))))).....((((....)))).......................... (-26.80 = -27.75 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:04 2006