Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,862,367 – 4,862,458 |
Length | 91 |
Max. P | 0.702734 |
Location | 4,862,367 – 4,862,458 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 82.71 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -18.19 |
Energy contribution | -18.42 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.29 |
Mean z-score | -2.45 |
Structure conservation index | 0.63 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4862367 91 - 22407834 AGGCAGCCGGAAUUCUUGAGGCGUGUC--CCAGGACUCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUUAAGAUGCCCAG .(((((((...........))).))))--..(((((.....))))).(((((.(((....)))..(((((((....)))))))....))))). ( -32.30) >DroSec_CAF1 12578 85 - 1 AGGCAGCCCGAAUUCUUGAGGCGUGUCCCCCAGGACGCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAA--------G .(((.((((((....))).)))((((((....))))))............)))(((....)))....(((((....)))))...--------. ( -27.80) >DroSim_CAF1 13431 85 - 1 AGGCAGCCCGAAUUCUUGAGGCGUGUCCCCCAGGACGCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAA--------G .(((.((((((....))).)))((((((....))))))............)))(((....)))....(((((....)))))...--------. ( -27.80) >DroEre_CAF1 13271 91 - 1 CGGCAGCCCGAAUUCUUGAGGCGUGUC--CCAGGACAUAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAAGAUGCCCAG .((((((((((....))).))).))))--..(((((.....))))).(((((.(((....)))....(((((....)))))......))))). ( -31.40) >DroYak_CAF1 13121 91 - 1 CGGCAGCCCAAAUUCUUGAGGCGUGUC--CCAGGACGUAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAAGAUGCCCAG .((((((((((....))).))).))))--..(((((.....))))).(((((.(((....)))....(((((....)))))......))))). ( -31.00) >DroAna_CAF1 17344 81 - 1 AUGAAUC-CGGAGGCUCGAGGCGUGUC--UCGACAUCCAAUGUCUUCGGGCCCUUGGCAACAUAAUGAGCUAAAAAUAGCAGAA--------- (((...(-(((((((((((((....))--))))........))))))))(((...)))..))).....((((....))))....--------- ( -24.00) >consensus AGGCAGCCCGAAUUCUUGAGGCGUGUC__CCAGGACGCAAUGUCCUUUGGGCCAUGGCAACAUAAUGAGCUAAAAAUAGCUAAA________G .(((.((((((....))).))).......(((((((.....)))))..)))))(((....)))....(((((....)))))............ (-18.19 = -18.42 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:01 2006