Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,844,383 – 4,844,476 |
Length | 93 |
Max. P | 0.862750 |
Location | 4,844,383 – 4,844,476 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 95.70 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -21.10 |
Energy contribution | -21.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.92 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4844383 93 - 22407834 GCUUUAACUCGGCCCAAAACUUCAUGACCGCCACAGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCACCACCAAACGCAUCACCUGCAGCACC (((.......(((.((........))...)))....(((((....))))).....((((..(((((..........)))))..)))))))... ( -23.40) >DroEre_CAF1 8131 93 - 1 GUUUCAACUCGGCCCAAAACUUCAUGACCGCCACCGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCACCACCAAACGCAUCACCAGCAGCACC ..........(((.((........))...)))...(((((((....((.......))....(((((..........)))))..)))))))... ( -22.90) >DroYak_CAF1 8085 93 - 1 GUUUCAACUCGGCCCAAAACUUCAUGACUGCCACCGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCUCCACCAAACGCAUCACCAGCAGCACC ..........(((.((........))...)))...(((((((....((.......))....(((((..........)))))..)))))))... ( -22.80) >consensus GUUUCAACUCGGCCCAAAACUUCAUGACCGCCACCGCUGCUGCACAGCAGAUCUCGCAGCAGAUGCACCACCAAACGCAUCACCAGCAGCACC ..........(((.((........))...)))...(((((((....((.......))....(((((..........)))))..)))))))... (-21.10 = -21.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:48 2006