Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,844,055 – 4,844,149 |
Length | 94 |
Max. P | 0.515513 |
Location | 4,844,055 – 4,844,149 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 75.27 |
Mean single sequence MFE | -20.67 |
Consensus MFE | -16.25 |
Energy contribution | -16.25 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.26 |
Mean z-score | -0.60 |
Structure conservation index | 0.79 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515513 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4844055 94 - 22407834 UCAAUU--------GUG-AAAUUUGUUAAAUCCCCUGCGAUUUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUUAGCAGCUCGGAGUUUCUGGCAUCCAU ......--------.((-(((((.((..........))))))))).((..((((((((((.(((...(((.....)))..))).).)))))..))))..)).. ( -19.20) >DroVir_CAF1 8255 93 - 1 UAUAUUUGCUUUAAUU-CUAAUACG--AAUC-------ACAUUGCAGGUGGCCAAACUCGUCUUGGACGACUAUUUCAGCAGCUCUGAGUUCUUGGCUUCCAU ......(((....(((-(......)--))).-------.....)))((.((((((..(((((...)))))....(((((.....)))))...)))))).)).. ( -20.80) >DroSec_CAF1 7485 94 - 1 UCAAUU--------UUG-AAAUUCGUUAAAUCCCCUGGGCUCUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUUAGCAGCUCGGAGUUUCUGGCCUCCAU ......--------...-.............((....)).......((.(((((((((((.(((...(((.....)))..))).).)))))..))))).)).. ( -21.20) >DroSim_CAF1 7563 94 - 1 UCAAUU--------UUG-AAAUUCGUUAAAUCCCCUGGGCUUUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUUAGCAGCUCGGAGUUUCUGGCCUCCAU ......--------(((-(((((((..........)))).))))))((.(((((((((((.(((...(((.....)))..))).).)))))..))))).)).. ( -22.60) >DroEre_CAF1 7800 94 - 1 UCAACU--------UUG-AAAUCCAUUAAAUCCUCUGUGCUUUCAAGGUGGCCAAACUUGUGCUUGAUGACUACUUCAGCAGCUCGGAAUUUCUGGCCUCCAU ...(((--------(((-(((..(((..........))).)))))))))(((((...(((.(((...(((.....)))..))).)))......)))))..... ( -19.90) >DroAna_CAF1 8330 93 - 1 UCCUUU---G-UAUCUA-UAAUUUAUGAAUUUAUG-----UGUCCAGGUGGCCAAGCUCGUCCUGGAUGACUAUUUCAGCAGCUCGGAGUUCUUGGCUUCCAU .....(---(-.((.((-(((.........)))))-----.)).))((.(((((((..(.(((.((.((.((.....)))).)).))))..))))))).)).. ( -20.30) >consensus UCAAUU________UUG_AAAUUCGUUAAAUCCCCUG_GCUUUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUCAGCAGCUCGGAGUUUCUGGCCUCCAU ..............................................((.(((((((((((.(((...(((.....)))..))).).)))))..))))).)).. (-16.25 = -16.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:47 2006