Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,839,236 – 4,839,328 |
Length | 92 |
Max. P | 0.537111 |
Location | 4,839,236 – 4,839,328 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.10 |
Mean single sequence MFE | -17.43 |
Consensus MFE | -13.88 |
Energy contribution | -13.80 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.29 |
Mean z-score | -2.11 |
Structure conservation index | 0.80 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4839236 92 + 22407834 AUUACCAUCGCACA-ACUCAAAUUUCCCGUCAACCCUCCAUCAUUCUGUCAACGAAAAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU ....((.((((...-............(((..((.............))..)))....((((((....))))))))))))............. ( -16.12) >DroSec_CAF1 2690 92 + 1 AUUACCAUCGCACA-ACUAAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAAAGUGACAAUUAUGUCACGCGAGGAGCGCAAACCCAU ....((.((((...-.......((((..((((..............))))...)))).((((((....))))))))))))............. ( -18.94) >DroSim_CAF1 2761 92 + 1 AUUACCAUCGCACA-ACUCAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAAAGUGACAAUAAUGUCACGCGAGGAGCGCAAACCCAU ....((.((((...-.......((((..((((..............))))...)))).((((((....))))))))))))............. ( -18.94) >DroEre_CAF1 2722 92 + 1 AUUACCAUCACAUA-ACUCAAAUUUCCCGUCACUCCUCUAUCAUUCUGACAACGAAAAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU ..............-.............(.(.((((((.....(((.......)))..((((((....))))))..)))))).))........ ( -17.60) >DroYak_CAF1 2740 92 + 1 AUUACCAUCGCACA-ACUCAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAUAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU ..............-.............(.(.(((((((...((((.......)))).((((((....))))))).)))))).))........ ( -18.60) >DroAna_CAF1 2776 87 + 1 AUUACCAUCGCACAAACUCAAAUUUCCUGUCAUUCCU--GUCACCUUGUCACCGGGACGAGCC----AUGUCACGCGAGGAACGCAAACCCAU ....((.((((................((.((....)--).)).((((((.....))))))..----.......))))))............. ( -14.40) >consensus AUUACCAUCGCACA_ACUCAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAAAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU ............................(.(.((((((.....(((.......)))..((((((....))))))..)))))).))........ (-13.88 = -13.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:46 2006