Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 552,223 – 552,313 |
Length | 90 |
Max. P | 0.553283 |
Location | 552,223 – 552,313 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 96.30 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -30.89 |
Energy contribution | -30.70 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.97 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 552223 90 + 22407834 AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGUCAGCGGCAGGCUUUCCACGUGCCGCAAAUCGCGGAA ......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. ( -30.30) >DroSec_CAF1 6572 90 + 1 AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGACAGCGGCAGGCUUUCCACGUGCCGCAAAUCGCGGAA ......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. ( -30.30) >DroEre_CAF1 6682 90 + 1 AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGUCAGCUGCAGGCUCUCCACGUGCCGCAAAUCGCGGAA ......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. ( -32.50) >DroYak_CAF1 6656 90 + 1 AUGAUUCACCCGAGAUAGUCGGGGUGUUUCACCUGCUGACCGGACAAGUGGAGUCCGCUGCAGGCUCUCCACGUGCCGCAAAUCGCGGAA .(((..(((((..(.....).)))))..))).((((.((.(((.((.((((((.((......))..)))))).)))))....)))))).. ( -33.90) >consensus AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGUCAGCGGCAGGCUCUCCACGUGCCGCAAAUCGCGGAA ......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. (-30.89 = -30.70 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:02 2006