| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,836,179 – 4,836,283 |
| Length | 104 |
| Max. P | 0.540257 |
| Location | 4,836,179 – 4,836,283 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.48 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -13.18 |
| Energy contribution | -12.73 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4836179 104 - 22407834 CUAUA-AAUAUAAAUAACUAAAU-AUUUGACAU--CCACCCAGUGAGGUCUCCCUGCGUCUCUUCUCGCCGGUGGUCUUCAUAUCGAACCUCUGCUUCGGCGGCAAUC ...((-(((((..........))-)))))....--.......((((((.(..((.(((........))).))..).)))))).........((((....))))..... ( -23.50) >DroPse_CAF1 5651 92 - 1 CUAAA-AAUA--AA----------CUCUGCCCU--C-UUCUAGUGAGAUCUCGCUGCGUCUCUUCUCGCCGGUCGUUUUCAUAUCAAACCUCUGCUUCGGCGGCAAUC .....-....--..----------...((((..--.-.....((((((...(((((((........)).))).)).))))))...........((....))))))... ( -19.70) >DroEre_CAF1 5322 104 - 1 CUAUA-AAUAUAAAUAACUAAAU-AUUUGACUU--CCGCCCAGUGAGGUCUCCCUGCGUCUCUUCUCGCCGGUGGUCUUCAUAUCGAAUCUGUGCUUCGGCGGCAAUC ...((-(((((..........))-)))))....--..(((..((((((.(..((.(((........))).))..).))))))...........((....))))).... ( -26.40) >DroMoj_CAF1 5114 101 - 1 CUAUAAAAUAC--UUA---CAG--AAAUGUUUUUUGCUUUCAGUGAAAUUUCCCUCCGGCUCUUCUCGCCGGUGGUUUUCAUAUCAAAUCUGUGCUUUGGCGGCAAUC ...........--..(---((.--...)))...(((((....((((((....((.(((((.......))))).)).))))))...........((....))))))).. ( -23.40) >DroAna_CAF1 5318 101 - 1 ----A-ACUAUAAAUAACUGACCAAUUUUUUUU--UCGCCCAGUGAGGUCUCGCUGCGUCUCUUCUCCCCGGUGGUCUUCAUCUCGAACCUUUGCUUCGGUGGCAAUC ----.-.............(((((.........--..((.((((((....)))))).)).............)))))..............(((((.....))))).. ( -18.55) >DroPer_CAF1 5687 92 - 1 CUAAA-AAUA--AA----------CUCUGCCCU--C-UUCUAGUGAGAUCUCGCUGCGUCUCUUCUCGCCGGUCGUUUUCAUAUCAAACCUCUGCUUCGGCGGCAAUC .....-....--..----------...((((..--.-.....((((((...(((((((........)).))).)).))))))...........((....))))))... ( -19.70) >consensus CUAUA_AAUAU_AAUA____A___AUUUGACUU__CCUCCCAGUGAGAUCUCCCUGCGUCUCUUCUCGCCGGUGGUCUUCAUAUCAAACCUCUGCUUCGGCGGCAAUC ...........................((((...........((((((...(((((((........)).))).)).))))))...........((....))))))... (-13.18 = -12.73 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:43 2006