Locus 1766

Sequence ID 2L_DroMel_CAF1
Location 4,825,121 – 4,825,224
Length 103
Max. P 0.997422
window2839

overview

Window 9

Location 4,825,121 – 4,825,224
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.75
Mean single sequence MFE -27.72
Consensus MFE -15.11
Energy contribution -15.50
Covariance contribution 0.39
Combinations/Pair 1.20
Mean z-score -3.29
Structure conservation index 0.55
SVM decision value 2.86
SVM RNA-class probability 0.997422
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4825121 103 - 22407834
UUUCGACCAGGAAUCAAUUUGAUUCGAUUAACUGAAAUUUGGCUCAAUUACCGUCAUUAAUUGACGGCAUGAUUGGUCUGGACUUACAAGUUUUCGGAUGGAA
.((((.((..(((((.....)))))((..((((.((.((..(..((((((((((((.....))))))..))))))..)..)).))...)))).)))).)))). ( -29.50)
>DroSec_CAF1 11689 88 - 1
UUUCGACCAGGAAUCAAUUUGAUUCGAUUAACUGAAAUUUGGCUCAAUUACCGUCAUAAAUUGACGGCAUGAUUGGACUAGAUUU---------------CAA
..........(((((.....))))).......((((((((((..((((((((((((.....))))))..))))))..))))))))---------------)). ( -30.00)
>DroSim_CAF1 11836 88 - 1
UUUCGACCAGGAAUCAAUUUGCUUCGAUUAACUGAAAUUUGGCUCAAUUACCGUCAUUAAUUGACGGCAUGAUUGGACUAGAUUU---------------CAA
..((((..((.((.....)).)))))).....((((((((((..((((((((((((.....))))))..))))))..))))))))---------------)). ( -28.50)
>DroEre_CAF1 11724 103 - 1
UUUCGCCCAAUAAUCAAUUUGAUUCGAUUAACUGAAAUUGGGAUCAAUUACUGUCAUUAAUUGAUGGCGUGAUUGGACUAGAUUUACUAGUUUUCGGAUGGGA
.....((((....((.....))(((((..((((((((((.((.((((((((.((((((....)))))))))))))).)).)))))..))))).))))))))). ( -28.30)
>DroYak_CAF1 11945 103 - 1
UUUCGCCGAAUAAUCAAUUUGAUUCGAUUAACUGAAAUUUGGAUCAAUUACCGUCAUUGAUUGAUGGCAUGAUUGGACUAGAUUUACAAGUUUUCGGAUGGCA
....(((((....))......((((((..((((.((((((((.(((((((((((((.....))))))..))))))).))))))))...)))).))))))))). ( -32.30)
>DroAna_CAF1 11353 94 - 1
---------CUAAUCAAUUUGGUUCAAUUAACUGAAUUUCGGAUCAAUUACUGUCUUACGAUGAUGACAUGAUUGGACGCUAGUUAAUUAUUUUGGCAAGGUU
---------..((((......(((((((((.(((.....))).........((((..........)))))))))))))(((((.........)))))..)))) ( -17.70)
>consensus
UUUCGACCAGGAAUCAAUUUGAUUCGAUUAACUGAAAUUUGGAUCAAUUACCGUCAUUAAUUGACGGCAUGAUUGGACUAGAUUUAC_AGUUUUCGGAUGGAA
..................................((((((((..((((((((((((.....))))))..))))))..)))))))).................. (-15.11 = -15.50 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:39 2006