| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,823,742 – 4,823,852 |
| Length | 110 |
| Max. P | 0.630880 |
| Location | 4,823,742 – 4,823,852 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 87.07 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -17.83 |
| Energy contribution | -20.83 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630880 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4823742 110 + 22407834 UUACAUUUUACAGUCCCAUCGAUUUUGGUUACUUCUUUUGAU------CUCAGAAGAAGUAAUUUUACCUGAGUUCAACCUUGCCUUAUUUGGUGAUCCUUCGAUAUGCGAAAAGU ..((.(((..((.....(((((....((((((((((((((..------..))))))))))))))................(..((......))..)....))))).))..))).)) ( -24.30) >DroSec_CAF1 10306 107 + 1 UUACAUCUUACAGUCCCAUCGAUUUUGGUUACUUCUUUUGAUAAAUAUCUCA---------AUUUUACCUGAAUUCAACCUUGCCUUAUUUGGUGAUCCUUCGAUGUUCGAAAUGU ................((((((....((((.........(((....)))(((---------........)))....))))(..((......))..)....)))))).......... ( -13.90) >DroSim_CAF1 10462 116 + 1 UUACAUUUUACAGUCCCAUCGAUUUGGGUUACUUCUUUUGAUAAAUAUCUCAAAAGAAGUAAUUUUACCUGAGUUCAACCUUGCCUUAUUUGGUGAUCCUUCGAUGUUUGAAAAGU ....(((((.(((...((((((((..(((((((((((((((........)))))))))))).....)))..)).......(..((......))..)....)))))).))).))))) ( -30.50) >consensus UUACAUUUUACAGUCCCAUCGAUUUUGGUUACUUCUUUUGAUAAAUAUCUCA_AAGAAGUAAUUUUACCUGAGUUCAACCUUGCCUUAUUUGGUGAUCCUUCGAUGUUCGAAAAGU ................((((((((..(((((((((((((((........)))))))))))).....)))..)).......(..((......))..)....)))))).......... (-17.83 = -20.83 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:37 2006