Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,823,200 – 4,823,295 |
Length | 95 |
Max. P | 0.687629 |
Location | 4,823,200 – 4,823,295 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.75 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -20.16 |
Energy contribution | -20.40 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.74 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4823200 95 + 22407834 AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU-----------------UGUGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGAUA ....(((((((((((..((((((........))))))....)).))-----------------))))((((((((.(((((.....)))))))))))))........))).. ( -26.30) >DroSec_CAF1 9739 93 + 1 AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU-----------------UGUGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGA-- .......((((((((..((((((........))))))....)).))-----------------))))((((((((.(((((.....)))))))))))))...........-- ( -26.00) >DroSim_CAF1 9896 93 + 1 AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU-----------------UGUGGCGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGA-- .......((((((((..((((((........))))))....)).))-----------------))))((((((((.(((((.....)))))))))))))...........-- ( -27.90) >DroEre_CAF1 9814 110 + 1 AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCACUUCGCAGGCGAACGAAAUUGAGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGGAUCGUAUCUGA-- ....(((.....((((.......(((((.((.(((((...(((.....))).))))).)).)))))..(((((((.(((((.....)))))))))))))))).....)))-- ( -26.20) >DroYak_CAF1 10061 110 + 1 AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCACUUCACAGGCAAAAGAAAUCGCGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGGAUCGUAUCUGA-- ..................((((.......((((((((..(((.....)))..))))))))....(((((((((((.(((((.....)))))))))))..))))).)))).-- ( -29.00) >consensus AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU_________________UGUGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGA__ ...........(((((.((((((........))))))..............................((((((((.(((((.....)))))))))))))...).)))).... (-20.16 = -20.40 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:36 2006