Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 549,859 – 549,957 |
Length | 98 |
Max. P | 0.582668 |
Location | 549,859 – 549,957 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.58 |
Mean single sequence MFE | -16.48 |
Consensus MFE | -0.31 |
Energy contribution | -1.11 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.02 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 549859 98 - 22407834 CUUGAGGAACAUACCAAUGAAACCAUUAGUCAUAUGAUUUCCCAAAAACUCGGAUAUAU----UUCCCCACGCAAACAGAAUAC-----------UUUUCUGGUUCCAUCAUC ..((((((((........((((.(((.......))).))))..........(((.....----.))).........(((((...-----------..)))))))))).))).. ( -17.90) >DroSec_CAF1 4172 102 - 1 CUUGAAGAACACGUCAAUGAAACCAUUAGUCAUAUGAUUUCCCAAGAACUCGGAUAUAUGUACUUUCCCACGCAAACAGAAUAC-----------UUUUCUGGUUCCAUCAUC ..(((.((((.(((.((((....))))(((((((((...(((.........))))))))).))).....)))....(((((...-----------..)))))))))..))).. ( -15.90) >DroSim_CAF1 4484 102 - 1 CUUGAAGAACGCGUCAAUGAAACCAUUAGUCAUAUGAUUUUCCAAGAACUCGGAUAUAUGUACUUUCCCACGCAAACAGAAUAC-----------UUUUCUGCUUCCAUCAUC ...((((...((((.((((....))))(((((((((....(((........))))))))).))).....))))...(((((...-----------..)))))))))....... ( -18.90) >DroEre_CAF1 4283 105 - 1 CUUGAUCUACG--CAACUGAAACCAUUAGUCACGAUGUUUCCCAAGAACUCGUAUAUAU----UUCCCCAAGCAAACAGAAUUGUUUGAAAAAUAUUUUCUGUUUCCAUCG-- ...(((....(--(.(((((.....))))).((((.((((.....))))))))......----........))((((((((....((....))....))))))))..))).-- ( -16.50) >DroYak_CAF1 4249 99 - 1 CUUGAUGUUCA--UAAAUGAAAGCAUUAGUCACGUUGUUUCUCAAGAACUCGGAUAUAU----UUCACCACGCAAACAAAAUUGUUUGAAA-AUACUU-----UUCCAUCU-- ...((((....--....(((((......(((.((..((((.....)))).)))))...)----)))).....((((((....))))))...-......-----...)))).-- ( -13.20) >consensus CUUGAAGAACA__UCAAUGAAACCAUUAGUCAUAUGAUUUCCCAAGAACUCGGAUAUAU____UUCCCCACGCAAACAGAAUAC___________UUUUCUGGUUCCAUCAUC ............................................................................(((((................)))))........... ( -0.31 = -1.11 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:01 2006